Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00470 ATGACTAGCGTAACGGAAACAGAGCGAGACAACTACAGCATGATAAATTTCGAAGAAACAGAGTTACGACTCGGTCTTCCTGGTGGCTCAGCGAGTGAACACAGCGAGTCACCTATTAAAACCAGTGGTGGAAAGAGAGGTTTCTCAGAAACCTCTAATGTTGATTTGAAGCTTAATCTTTCTCCCACTAATGATTCTGTTTCACCTTCCTCAACTATACCTCTTGTACCTGCAAACAAAGTTAAAGACAAAACTTCTACTACTGCGCCTCCTCGCGCTAAGGCACAAGTTGTGGGTTGGCCACCAGTTCGATCCTTCAGAAAGAACATAGTGAATGTTCAAAAGAGCAACAATGAAGTAGAAGCAGAGAAGAAGACTAGTGGTAGTGGTGGTGGGAATGGAGCGTTTGTGAAGGTGAGCATGGATGGAGCACCTTATCTACGCAAGGTGGACCTCAAATTGTACAAAAGCTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTTAGTTCCTTCACAATTGGTAATTGTGGGTCCCAAGTTACCAAAGACTTCATGAATGAGAGTAAATTGATTGACCTTTTGAACGGTTCTGATTATGTACCAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTGCCTTGGGAAATGTTTGTTGGATCATGCAAGCGCCTCCGCATAATGAAAGGTTCTGAGGCAATTGGCCTAGCACCAAGGGCAGTGGAAAAGTGCAAGAACAGAAGCTGA 759 0.4387 MTSVTETERDNYSMINFEETELRLGLPGGSASEHSESPIKTSGGKRGFSETSNVDLKLNLSPTNDSVSPSSTIPLVPANKVKDKTSTTAPPRAKAQVVGWPPVRSFRKNIVNVQKSNNEVEAEKKTSGSGGGNGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIGNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAVEKCKNRS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00470 252 MobiDBLite consensus disorder prediction 23 53 - -
Car04g00470 252 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 245 IPR003311 GO:0005634|GO:0006355
Car04g00470 252 Pfam AUX/IAA family 19 243 IPR033389 -
Car04g00470 252 ProSiteProfiles PB1 domain profile. 134 234 IPR000270 GO:0005515
Car04g00470 252 Gene3D - 130 246 - -
Car04g00470 252 PANTHER AUXIN-INDUCED PROTEIN AUX28 12 245 - -
Car04g00470 252 MobiDBLite consensus disorder prediction 34 53 - -
Car04g00470 252 Coils Coil 103 123 - -
Car04g00470 252 SUPERFAMILY CAD & PB1 domains 127 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00470 Car-Chr4 4827412 4830582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00470 58 242 B3 DNA Binding Superfamily AT4G23980 27.027 5.62e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car04g00470 AUX_IAA 9.2e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00470 K14484 - tcc:18600188 343.969