Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00463 ATGTCGACCACAGCGGCTCAACCCAAGTCAAAGAAAACAGCTTCGACAAAGAAGCCACTTTCTCATCCAACCTACGCTGAGATGATAACTGAGGCTATTGTGAGTCTGAAAGAAAGAACTGGTTCAAGCCAACACGCGATAACCAAATTCATCGAAGAAAAGCACAAGGATCTATCTCCCACCTTCCGCAAATTAATCTTGCTTCATCTCAAAAAGTCGGTGGCTGCAGGCAAGCTTGTTAAGGTTAAGGGTTCATTCAAACTCGCTCCGGCTAAATCTTCTGTGGCTAAACCTAAAGCCGCTACTGCTCCCGCTGCTACCAAGAAGGCTAAGGCTGTTACCAAGCCAGCCGCCAAGGCTGCTACCAAGCCCAAGGCTAAAGCTGTTGCGAAGCCTAAAGCAGCGGCAAAGCCCAAAGCTGCAACGAAGCCGAAAACGGCGGCGAAGCCAAAAGCGAAGACGGTTAAGACAACACCGGTGAAGAAGGCTGTTGCTAAGACAACGAAGAAGGTTCCTGTGAAGGGTGTGAAGAAGCCTAAGAGCGTTAAAACGCCGGTGAAGAAGGCTAAGAAATGA 576 0.4896 MSTTAAQPKSKKTASTKKPLSHPTYAEMITEAIVSLKERTGSSQHAITKFIEEKHKDLSPTFRKLILLHLKKSVAAGKLVKVKGSFKLAPAKSSVAKPKAATAPAATKKAKAVTKPAAKAATKPKAKAVAKPKAAAKPKAATKPKTAAKPKAKTVKTTPVKKAVAKTTKKVPVKGVKKPKSVKTPVKKAKK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00463 191 CDD H15 21 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00463 191 MobiDBLite consensus disorder prediction 1 20 - -
Car04g00463 191 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00463 191 Gene3D - 16 103 IPR036388 -
Car04g00463 191 SUPERFAMILY "Winged helix" DNA-binding domain 18 98 IPR036390 -
Car04g00463 191 PANTHER HISTONE H1 3 190 - -
Car04g00463 191 MobiDBLite consensus disorder prediction 1 23 - -
Car04g00463 191 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00463 191 MobiDBLite consensus disorder prediction 97 191 - -
Car04g00463 191 MobiDBLite consensus disorder prediction 167 191 - -
Car04g00463 191 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car04g00463 191 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car04g00463 191 PRINTS Histone H5 signature 113 127 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car04g00463 191 PRINTS Histone H5 signature 177 191 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car04g00463 191 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 3 190 - -
Car04g00463 191 Pfam linker histone H1 and H5 family 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00463 Car-Chr4 4792104 4793126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00463 23 99 Single Myb Histone (SMH) Gene Family AT1G72740 32.051 2.87e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00463 K11275 - gmx:100810590 129.028