Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00450 ATGGAGGGAACAATTGAGGATGAAGTGGTAGATATTGAGAGTGCTTCTGACGGTTCTATAAACGATGATTCAGATGACGAGGGATCTTTGCCTTCTGAAATTGATGACAAACTGAATCTTGAGGAACCTCTAACTGAGGCGGAAATTGAAGACCTTATTTCTGAGCTGTTAGAAGTGGAGAGTAAGGCTGCGGAGGCCCAAGAAACTCTTGAAGAGGAGTCTCTTGCTAAAGTGGAGAATGAAGTTAGACAAGAACTGGAGCAAACTCTACAGGGGGATGATCTGGAAACTGCTGTTGCTGATGAGATGGCTACTTTTAAAGAAGATTGGGAAGCTGTTCTTGATGAACTTGAAACTGAAAGTTCCCACTTACTGGAACAACTTGATGGGGCTGGAATTGAACTCCCAAGCCTTTATAAGTGGATTGAAAGAGAAGCTCCCAATGGTTGCTGCACCGAAGCGTGGAAAAAGAGAAATCACTGGGTTGGGTCTCAGGCAACTGCTGAAATTGCTACGTCAATATCTGATGCTGAGAAATATCTACAAACACACAGACCTGTTAGAAGGCGACATGGCAAATTACTGGAAGAGGGTGCTAGTGGTTTTCTCCAAAAAAAAATTTCTCCTGAAACCCAGGAGTCTGGAAAAAAAGAAATTGAGGGGGACTGGGATGCATTTAATAAAATAGTTTCCGATGGGAGTGGTATTGATGCTTCGTTTGGCAGTAAGACTTGGGCTTCTGTTTATTTGGCCAGCACTCCACAGCAAGCTGCCTTGATGGGACTCAATTTTCCTGGAGTTAATGAGGTGGAGGAAATTGATGATGTTGATGCCAATTCTACCGATCCATTTGTTGCAGCTGCCGTTGCATATGAAAGAGAATTAGATCTTTCCGATGAACAAAGTAGACATTTCAAAAAGGTCAAAGAAGAGGATGATGCTATCGTTGATAAGAAGCTTCAAATACGTTTGAAACATAGGAGGCATCAAAAGAAAAGCAAACAAGAAGGAACTAGAGATGAAGGAGAAGGTCTGTTTGACAATAACAATGTTGCATGTCAGAATATGGAGGACGATAAAGTTAATGGTTTTGATGCCAATTTTCATCTTGACCAAGAAAATCCTGTAAGACCTGGTAATTTGTTAGATCCACCCAAATCTTCATTGAGTGATGCTATTGAGCAAAGAGGAACCAAGCGACTAAATGACGGTGAGCTTGACGCTGATAAAAAGAAATGCCGGATTGATATCATCAACAGTGATGATGAAGTATACGTTGCCGAAGATAAGTTGAATTGCAATATCATTGAGGATCAATATAATATAAAGGGTTTGTGCAGCAGTGGTGCTGACTCTTTTCCTTCGGAGGGTCCGAATGAGAAATTTTACTGCACAATTTGTGACAAAGTAGCTCTTGAAGTGCACCAACACCCTCTTTTGAAAGTTATTATTTGTGGAGATTGCAATTGTTTAATGAAAGAAAAGACACATCCGAAGGATTTGGCTTATGAGTTGTCTGAGTGTTACTGTGCATGGTGCGGTGGAAGCAGTGGCTTAGTTACTTGCAAATTATGCAAGATATTCTTCTGCACTAAATGCGTTAAGAAAAATCTTGGTGTAGAAATCGATCCTGAAACTAAGTCTTCTGGATGGCATTGTTGTTGTTGCCGTCCGAATCTTCTACAAAAACTTTCATTGCAACTAGAGAAAGCTATGGGATCTGCTGCTATACTAGTTTCCAGTTCTGGTAGTAGTGATTCAGATAATTCAGATgattcagattcagattcagattcagattcagattcaaattcaAAGATAAATGTTACAATAAGCACTAAAAGAAAACGCAAAAAGAATATTAGGAGGATACTTGATGATGCGGAATTAGGAGAAGAGACAAAAAAGAAAATAGCAATTGAAAAGGAACGTCAGGAACGCCTGAAGTCTTTGAGAGTACAGTTTTCTGCCTCATCAATTGATAATAGCTCGGTTGGCTGTAATGGGAGTTCATCTGAAGGTGCAAGCGTTGAAATTCTCGGTGATGCGCTGGCAGGTTATATAGTGAATGTTGTGAGGGAGAAAGGGGAAGAAGCGGTTAGAATACCTCCGAGCATTTCAGCTAAGCTGAAGGCCCATCAGATTGCCGGAATAAGATTCATGTGGGAAAATATTATACAGTCAATTAGAAAAGTTAAGTCTGGAGACAAAGGTCTAGGTTGTATTCTTGCTCATACCATGGGCCTCGGTAAAACATTTCAGGTAATAGCTTTCTTGTACACTGCAATGAGAAGTGTTGATTTGGGTTTAAGAACTGCACTTATAGTCACACCTGTCAATGTGCTACATAATTGGCGGACGGAGTTCATCAAATGGGCACCAATAGAATTAAAGCGACTTAGAGTCTTCATGCTGGAAGATGTATCAAGAGATAGGAAGGCACAATTACTCGCAAAATGGAGAGCAAAGGGTGGTGTATTCTTAATTGGCTATACTGCTTTCCGGAATTTGTCTTTCGGCAAGAACGTCAAAGACCGGGAGACGGCTAGAGAAATTTGCCATGCTTTGCAGGATGGGCCGGACATTCTTGTGTGTGATGAGGCGCATATAATAAAAAATACTAAGGCTGACGTTACTCATGCCTTGAAACAAGTCAAGTGCCAGAGAAGAATTGCGCTTACGGGATCTCCTCTTCAAAATAATCTCATGGAATATTATTGTATGGTTGATTTTGTACGAGAAGGTTTTCTTGGAAGCAGTCATGAGTTTAGGAACCGCTTCCAAAATCCTATAGAAAATGGTCAACACACGAATTCCACTTTGACTGATGTAAAAATTATGAACCAAAGGTCTCACATCCTCTATGAACAATTAAAAGGCTTTGTCCAAAGAATGGACATGAATGTTGTGAAGAAGGACCTACCTCCCAAAACTGTTTTCGTGATAACGGTCAAGCTTTCTCCCCTGCAAAGAAAATTGTACAAGAAATTCCTTGATGTTCATGGATTCACTAATGTCAGGGGTAACCATGAACAGCTAAGAAAGAGGAGTTTTTTTGCTGGGTACCAGGCATTGGCTCGGATATGGAACCACCCTGGAATCTTGCAACTGACAAAAGAAGACAAGGACCGTGTAAGACCTGAAGATGCTGTTGAGAATTTCCTTGTTGAAGATATTTCCAGTGATGAAAATTCCGATACTAATGTGCTTGCTGGAGAGAAGTTGAAGTACACAAATGATTTGCTGCAAAGGAAGGATGGTAATGGTTTTTTCATAAAGGGCTGGTGGAAAGATATTCTTCATGGAAAAATTTATAGAGAGCTTGATCAAAGTGGCAAAATGGTTTTGCTAATTGATATACTTACCATGAGTTCTGATGTGGGTGATAAGGTGTTAGTTTTTAGTCAGAGCATACCAACCCTGGACCTCATAGAACTTTATCTCTCAAGGCTATCTCGACGTGGCAAACGAGGAAAGTTTTGGAAGAAGGGAAAAGATTGGTATAGGCTGGATGGAAGGACAGAGAGCTCTGAAAGGCAGAAGCTTGTTGAGAGATTTAATGAGCCTTTGAATAGGAGGGTAAAATGCACACTAATTTCGACCAGGGCCGGCTCTTTGGGTATTAATCTTCATGCAGCTAATCGAGTTGTTATAGTTGATGGCTCTTGGAATCCAACATATGATCTGCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGAAAAAGCCTGTGTTTGCTTATCGATTGCTGGCTCATGGAACTATGGAAGAGAAAATATATAAGCGCCAGGTAATACAAGATGATTGCTTCTATTCTTCATGTGTTAATTTCTCTAATGTATGGAAATGGTTTCAATAG 3858 0.4015 MEGTIEDEVVDIESASDGSINDDSDDEGSLPSEIDDKLNLEEPLTEAEIEDLISELLEVESKAAEAQETLEEESLAKVENEVRQELEQTLQGDDLETAVADEMATFKEDWEAVLDELETESSHLLEQLDGAGIELPSLYKWIEREAPNGCCTEAWKKRNHWVGSQATAEIATSISDAEKYLQTHRPVRRRHGKLLEEGASGFLQKKISPETQESGKKEIEGDWDAFNKIVSDGSGIDASFGSKTWASVYLASTPQQAALMGLNFPGVNEVEEIDDVDANSTDPFVAAAVAYERELDLSDEQSRHFKKVKEEDDAIVDKKLQIRLKHRRHQKKSKQEGTRDEGEGLFDNNNVACQNMEDDKVNGFDANFHLDQENPVRPGNLLDPPKSSLSDAIEQRGTKRLNDGELDADKKKCRIDIINSDDEVYVAEDKLNCNIIEDQYNIKGLCSSGADSFPSEGPNEKFYCTICDKVALEVHQHPLLKVIICGDCNCLMKEKTHPKDLAYELSECYCAWCGGSSGLVTCKLCKIFFCTKCVKKNLGVEIDPETKSSGWHCCCCRPNLLQKLSLQLEKAMGSAAILVSSSGSSDSDNSDDSDSDSDSDSDSNSKINVTISTKRKRKKNIRRILDDAELGEETKKKIAIEKERQERLKSLRVQFSASSIDNSSVGCNGSSSEGASVEILGDALAGYIVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRTEFIKWAPIELKRLRVFMLEDVSRDRKAQLLAKWRAKGGVFLIGYTAFRNLSFGKNVKDRETAREICHALQDGPDILVCDEAHIIKNTKADVTHALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLTDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSPLQRKLYKKFLDVHGFTNVRGNHEQLRKRSFFAGYQALARIWNHPGILQLTKEDKDRVRPEDAVENFLVEDISSDENSDTNVLAGEKLKYTNDLLQRKDGNGFFIKGWWKDILHGKIYRELDQSGKMVLLIDILTMSSDVGDKVLVFSQSIPTLDLIELYLSRLSRRGKRGKFWKKGKDWYRLDGRTESSERQKLVERFNEPLNRRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQKKPVFAYRLLAHGTMEEKIYKRQVIQDDCFYSSCVNFSNVWKWFQ 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00450 1285 Gene3D - 1098 1272 IPR027417 -
Car04g00450 1285 SMART helicmild6 1142 1239 IPR001650 -
Car04g00450 1285 MobiDBLite consensus disorder prediction 1 30 - -
Car04g00450 1285 SMART ultradead3 706 927 IPR014001 -
Car04g00450 1285 MobiDBLite consensus disorder prediction 325 346 - -
Car04g00450 1285 Gene3D - 968 1084 IPR027417 -
Car04g00450 1285 CDD ADDz_ATRX 460 558 - -
Car04g00450 1285 Pfam SNF2-related domain 732 1034 IPR000330 GO:0005524|GO:0140658
Car04g00450 1285 Gene3D - 683 964 IPR038718 -
Car04g00450 1285 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 732 915 IPR014001 -
Car04g00450 1285 PANTHER RAD54-LIKE 27 1264 IPR044574 GO:0016887
Car04g00450 1285 PANTHER RAD54-LIKE 27 1264 - -
Car04g00450 1285 Coils Coil 107 127 - -
Car04g00450 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 964 IPR027417 -
Car04g00450 1285 MobiDBLite consensus disorder prediction 1 41 - -
Car04g00450 1285 CDD SF2_C_SNF 1106 1250 - -
Car04g00450 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 970 1265 IPR027417 -
Car04g00450 1285 Pfam Helicase conserved C-terminal domain 1115 1239 IPR001650 -
Car04g00450 1285 ProSiteProfiles ADD domain profile. 452 584 IPR025766 -
Car04g00450 1285 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1119 1285 IPR001650 -
Car04g00450 1285 Gene3D - 987 1062 - -
Car04g00450 1285 MobiDBLite consensus disorder prediction 580 607 - -
Car04g00450 1285 Coils Coil 49 76 - -
Car04g00450 1285 SUPERFAMILY FYVE/PHD zinc finger 506 563 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00450 Car-Chr4 4625040 4647863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00450 740 1263 RAD5 or RAD16-like Gene Family AT5G43530 24.671 1.39e-27 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car04g00450 SNF2_N 1.4e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00450 K10779 - gmx:100794911 1991.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00450 04 4625040 4647863 Car04g00450 04 4625040 4647863 ECH