Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00446 ATGTCTCCTAATCCAAGGGTTATTAAAGCCTATAATGCTATGAGGGCCTTAGGAATCTCTGAGAATGAGGTGAAACCGGTGTTGAAGAATTTGGTTAAAGTGTACGATAGAAATTGGGAACTTATTGAAGAAGACAATTATCGGACACTTATAGATGCATACTTTGAGTTAAAGGAAGATAAGCAGGAAGAGCATAAGAGAAAAGCTCCAATCAGTTCTCATGATGGAGAAAGACCAAAACAGAAACTTCACTTGGTTGATAGGGACAACCATGTTTCATCAACTGACAACTCAAGACAAGTGTTGTCTGTAGAAGACACTGAGATACGTCCAAAGACTTTTAAACACGAAACTATTAAACCATCTCAAATTTCCAGGCAAGATATGAAGCCCACAGCCAGTTCACAGGCATTGCAGAGAAGGTTGAGCGACCAAGAAAGGATCTCAAGTTTACCTTGCATGGCTGCTAGAGATAAAAAATATTGTCCCGGGGAAGCATCATCTGCAGGGCATTGTAAAGATCCAATTGATGAACCTCGCCACCCTTGTATTCAGAGAAAAATACTGTCCAGTGATCATTATCAGAAGAAGATTACAACATCAGGAACTGAGAAACCTAAGCTTCATCTGGGATCTGTTTCGAGGAGTTGCAATGGCTCACCTGATGCTTCAAATGGAAATCTTTCTGTCAAATACCTGTCAAATGTGTATCAGAATACACAAAAGAAAGAAGATagccccacatgcaataataacaacagaatcagtaaggctaatattgatattgctgcttcacccttgggagAAGTTAAGATTTCTTTAAATTGTGATTCTGCATTGGATCAACCAAATTTCCATATTCCTAATTTGGATGTTGTTATGAAATCCGTGGAGGAGAAATACCTGAGGTCTTGCAAGACTGTCGAACCCCAACTATCCATGACGAAGCTATTAGATGATTTATGCAGAAGTTACTTGAAGATGGGCTTGAATTTAAGTCGAAAGGGGTTGATTCCTAAGCCAAGGCAAGCTCTTGCTGAGGATAAAAAGAAATCCTTTCGATATTTCGATGACATATCAAAAGGTTCAGAAAAAATTAAAATATCATTATTAGATGAGACTGAAAGTGAGGATTTTCCAAAGTTTAATTACATACCATGTAATGTAATATATCAAAGTGCTAATGTAAATATTTCACTTGCTCGGATTGCGGATGAGGATTGCTGTTCTGATTGTTCAGGCGACTGTCTTTCCTTATCACTTCCTTGTGCATGCTCTCAAGAAACTGGGGGAGAGTTTGCTTACTCTTCACAAGGTTTGTTGAAAGACAAATTTTTATCAGATTGCATGTCTATGCTACTGGAACCTCAAGATCATCATTATGTGTATTGTAAAGAATGCCCAATTGAGAGGACTAAGAATGAGCACAATCCTGAACCATGCAAGGGACATCTGGTTAGGAAGTTTATAAAGGAGTGCTGGAGAAAATGTGGATGTGACATGCAGTGTGGAAATAGGGTAGTGCAACGAGGTGTAAGACGTAAATTGCAGGTGTTTTTGACTCAAGAAGGAAAGGGATGGGGCGTTAGATCACTAGAAAACTTGCCCAAGGGATGCTTTGTATGTGAATATGCTGGGGAAATTTTAACCAATACAGAGTTATATGAAAGGATTGTCCAGAGCAGTGGCAATGACAGACATACATATCCGGTAACGCTTGATGCAGACTGGGGCTCAGAAGTGGGGTTAAAGGATGAAGAGGCATTATGCTTGGACGCAACATATAATGGGAATGTTGCAAGATTCATCAATCATAGATGCGCTGATGCAAATCTAATAGACATTCCTGTTGAAGTGGAGACACCTGATCGACACTATTATCATCTTGCCCTCTTTACTAACAGAAATGTGAATGCGTACGAGGAGTTGACATGGGATTATGGTATTGACTTCGATGATCACACCCATCCTATTAAAGCATTTGAATGTTGTTGCGGAAGCACCTTCTGCCGTGATAAGAAGCAAAAAGGAACTAGATTAACAAAGACTAAAAAACTCAAGAATACATATTCACATATAAAGGCTTCAACTAATCAAAGAGCAGGAGGTCATCTCCAGCCACATCCTACCACAGAATGTAAAGAAGCACATTCTACGACATTTGTTTCTCCCCCTCAAGAAATTGATGCTATCTCCTGGGGAACAGATCCTATTGAAAATATTCTTCAGCTTCCTGATAATGTTCCCTTCCAGAATGATCAGGTGGAATACAATGGTTCTTACGTCTTGGATGGAAATGGTAAACCAACGGATTTCAAGGAGTGGGTTGATCAGTTAATGTCGGATGATGATTCTCTTCAACCAAATTGGAATGCACTTCTCGGTGataataataataataacaataTTGCAGAACCAAAGCCAAAGGAAACCCAGGTTTCACTGCAGCAGTATGTACCATCTAAAGAAGTTAACGATCTTCCTAATTCTGTGTCGACTACATCACAACCTAAGCCCAGAATGCGCTGGACTCCAGAACTTCATGAGGCCTTTGTAGAAGCAGTCAATCAGCTTGGTGGCAGTGAGAAGGCTACTCCAAAGGGTGTCTTGAACCTGATGAAAGTTGAGGGCCTTACCATCTATCATGTGAAAAGCCACTTGCAGAAATATAGAACTGCCAGATACAAACCGGAATCATCAGAAGAAATTCCAGAGAAGAAGTTGGCTTCAATTGAAGAAATGACGTCTTTAGACTTAAAAACGACTAAGGGGATTACGGAAGCTTTGCGATTGCAGATGGAACTCCAGAAGCGACTTCATGAACAACTTGAGATACAAAGAAATTTACAAATTCAAATTGAGAACCAAGGGAAGCGTCTACAGATGATGTTTGAGCAACAGATTAAGTCAGATGATCCTTCTGCTCCACTATCAAGTGATGTGCTACCTTCTCCAGTTGAAAATTTAGAAAACTCAAATGAGGGTCATGAAAAAATTGGAATCAGTGGTAGCACTCCTCCCAACATGCCTGAAGAAAGTTTCCAGGATGCAAGCATAAAACAAAGGGGAGAAGATGCTCAAATTATTGATGAACTTGAGCTGGGAGAAGACCAACTTGCCGCACCACCCACAAAACGAGTGAAGACTGACTGA 3153 0.3907 MSPNPRVIKAYNAMRALGISENEVKPVLKNLVKVYDRNWELIEEDNYRTLIDAYFELKEDKQEEHKRKAPISSHDGERPKQKLHLVDRDNHVSSTDNSRQVLSVEDTEIRPKTFKHETIKPSQISRQDMKPTASSQALQRRLSDQERISSLPCMAARDKKYCPGEASSAGHCKDPIDEPRHPCIQRKILSSDHYQKKITTSGTEKPKLHLGSVSRSCNGSPDASNGNLSVKYLSNVYQNTQKKEDSPTCNNNNRISKANIDIAASPLGEVKISLNCDSALDQPNFHIPNLDVVMKSVEEKYLRSCKTVEPQLSMTKLLDDLCRSYLKMGLNLSRKGLIPKPRQALAEDKKKSFRYFDDISKGSEKIKISLLDETESEDFPKFNYIPCNVIYQSANVNISLARIADEDCCSDCSGDCLSLSLPCACSQETGGEFAYSSQGLLKDKFLSDCMSMLLEPQDHHYVYCKECPIERTKNEHNPEPCKGHLVRKFIKECWRKCGCDMQCGNRVVQRGVRRKLQVFLTQEGKGWGVRSLENLPKGCFVCEYAGEILTNTELYERIVQSSGNDRHTYPVTLDADWGSEVGLKDEEALCLDATYNGNVARFINHRCADANLIDIPVEVETPDRHYYHLALFTNRNVNAYEELTWDYGIDFDDHTHPIKAFECCCGSTFCRDKKQKGTRLTKTKKLKNTYSHIKASTNQRAGGHLQPHPTTECKEAHSTTFVSPPQEIDAISWGTDPIENILQLPDNVPFQNDQVEYNGSYVLDGNGKPTDFKEWVDQLMSDDDSLQPNWNALLGDNNNNNNIAEPKPKETQVSLQQYVPSKEVNDLPNSVSTTSQPKPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRTARYKPESSEEIPEKKLASIEEMTSLDLKTTKGITEALRLQMELQKRLHEQLEIQRNLQIQIENQGKRLQMMFEQQIKSDDPSAPLSSDVLPSPVENLENSNEGHEKIGISGSTPPNMPEESFQDASIKQRGEDAQIIDELELGEDQLAAPPTKRVKTD 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00446 1050 Coils Coil 926 946 - -
Car04g00446 1050 MobiDBLite consensus disorder prediction 103 123 - -
Car04g00446 1050 MobiDBLite consensus disorder prediction 124 145 - -
Car04g00446 1050 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 838 892 IPR006447 GO:0003677
Car04g00446 1050 MobiDBLite consensus disorder prediction 984 999 - -
Car04g00446 1050 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 835 895 IPR017930 -
Car04g00446 1050 MobiDBLite consensus disorder prediction 969 1026 - -
Car04g00446 1050 Pfam Pre-SET motif 359 506 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car04g00446 1050 Pfam Myb-like DNA-binding domain 840 891 IPR001005 -
Car04g00446 1050 SMART set_7 514 654 IPR001214 GO:0005515
Car04g00446 1050 MobiDBLite consensus disorder prediction 202 222 - -
Car04g00446 1050 Gene3D - 1 60 IPR043017 -
Car04g00446 1050 SUPERFAMILY Homeodomain-like 837 892 IPR009057 -
Car04g00446 1050 Pfam SET domain 526 648 IPR001214 GO:0005515
Car04g00446 1050 MobiDBLite consensus disorder prediction 61 94 - -
Car04g00446 1050 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 688 - -
Car04g00446 1050 Pfam MYB-CC type transfactor, LHEQLE motif 925 969 IPR025756 -
Car04g00446 1050 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 710 IPR025776 -
Car04g00446 1050 ProSiteProfiles SET domain profile. 514 648 IPR001214 GO:0005515
Car04g00446 1050 Gene3D SET domain 359 673 IPR046341 -
Car04g00446 1050 SUPERFAMILY SET domain 367 671 IPR046341 -
Car04g00446 1050 ProSiteProfiles Pre-SET domain profile. 408 511 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car04g00446 1050 MobiDBLite consensus disorder prediction 61 145 - -
Car04g00446 1050 Gene3D - 837 896 - -
Car04g00446 1050 SMART preset_2 356 498 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car04g00446 1050 CDD SET_SETDB-like 380 648 - -
Car04g00446 1050 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 688 - -
Car04g00446 1050 Pfam Ubiquitin-binding WIYLD domain 6 59 IPR018848 GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00446 Car-Chr4 4584530 4597664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00446 747 967 G2-like Transcription Factor Family AT4G28610 58.874 3.30e-71 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Car04g00446 Pre-SET 4.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00446 - - gsj:114402909 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03074 03 75683107 75688456 Car04g00446 04 4584530 4597664 ECH
Car04g00446 04 4584530 4597664 Car04g00446 04 4584530 4597664 ECH