Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00429 ATGAAAATTCTTCTTCTTTTGTTGTTACTGTTTTTTAATCTTACTCTATATGCTACTGCTACTGAAGCTGAATATGATCATTGTAACTGTGATGACGAAGAAGCTCTTTTCAGCATCCACACCATACTTGTTGGTCAAAAAGTCAGTGACTTTTTCATTGCTGTTGCATATTTTTCCATACCAATTGAACTTCTTTACTTTGTTAGCCGTTCCAATGTTCCTTTCAAATTGCTTTTCCTTCAATTCATAGCCTTCATAGTTCTATGTGGTATGACTCATTTACTCAATGCTTATTCTTATCATGGTCCTCCTTCTTTTCACTTGCTTCTTTCTATCACTGTTGCTAAATTCCTAACTGCTCTTGTGTCATGTGCAACTGCATTGACACTTCCACCTTTGATCCCCCTCCTTTTGAAAATTAAGGTGAGGGAGCTTTTCTTGAGGCAGAATGTGATGGAATTGGGCCAAGAGGTTGGGATTATGAAGAAACAGAAGGAAGCTAGTTGGCATGTTAGGATGCTCACTAGGGAGATTAGGAAGAGTCTTGATAAACATACCATTTTGTATACTACACTTGTTGAGCTTTCTAAGGCTTTTGATTTGCATAATTGTGCGGTTTGGATGCCGAATGAGGATAGGCGAGAAATGTATTTGACTCATGAATTGAAATCGGATTCGGGGAAGAGTTTTCATAATTCTATTCCTGTGATTGACCCTGATGTGTTGGAGATAAGGAAAACTAAAGGGGTGAAGATTTTGAGGCCAGAATCTAAACTAGGAGCTGGAAGTAGTGGTGGCGGCAGTGGCAAGGAGTTGGGTGCTGTTGCAGCTATTCGTATGCCGATGCTTCATGTTTCAAATTTCAAAGGAGGGACGCCGGAGTTGGTTGATACGTGTTATGCTATACTGGTTTTGGTTCTTCCAAGTTCGAACTCTAGGGTTTGGACCAAGCAAGAGATGGAGATAGTTGAGGTGGTTGCTGATCAGGTAGCTGTAGCGCTTTCTCATGCATCGGTTCTTGAAGAGTCTCATTTAATGAGACAGAAACTGGAAGAGCAGAACCGAGCGTTGCAGCAGTCTCAGAAGAACGCAATGATGGCCAGCCAGGCTAGGAAGTCATTCCAGACTGTGATGAGCCATGGACTGAGGAGGCCTATGCATTCGGTTGTCGGGATGCTTTCCTTGTTTCAAGATGGTATTACGAGGCCTGAACAGAAGATTATTGGGGACACGATGTTGAAAGTCGGTAATGTGCTGTCTAGTTTAGTAAACGATGTAATGGATATTTCTGATAATAAAAAGGGAGGCCTCCAATTAGAGATGAAACCTTTCCTTCTCCATTCCATGTTGAGGGAAGCTGCTTCCATTGCAAAGTGCTTGTGTGTTTATGAAGGCTTCGGTTTCGAAATCAATGTCCAGAAGTCTTTGCCTGAAAAAGTTTTGGGCGACGAAGCAAGGACTTTTCAAGTAATTATGCATATTATTGGATATTTATTGAACACGTGTGACCGAGGGAAACTTGCTTTCCGGGTTTTACTAGCAAGTGATGGTGGAGATAAGGATGACAAAAAATTGGGTGTATGGAGATCAAGCAGCCAAGTTGAGTACGTAAATATAAAATTTGATTTTCAGATTACAGGTAGTTCTGAGTCAGATGAATCAATCTCAACAAAACAACATTCTAGTAGGAGGCTGTATCACAATAGTGAATCTAAGGAGGGCCTAAGCTTCAACATGTGCAGGAAGTTGGTACAGATAATGCAAGGTAATATATGGATATCACCAAATTCTGATGGTTTGGTGCAAGGCATGTCACTTCTTCTCAAGTTTCAGACAGGACCATCACTTGAAAGATACATATTTGCTCCTAAAGATTCTTCAAACTCACAGTTTAGAGGCCTCAAGATTTTGTTAGCAGATGACGATGGTTTAAACAGGATCGTGACGAAGAAACTACTCGAGAAGCTAGGTTGTCAAGTAACAGCAGTTACGTCAGGGTTTGAGTGCCTGAGTGCTATAAGCAGCTCCGCTAACTCATTTAAAATTATCATGTTGGATATTCACATGCCTGAAATGGATGGTTTTGAAGTGGCAACTAGGATCAGGAAGTTCAATGGCCCTAACTGGCCTTTGATCATAGCTGTTATAGCAAATGCAGAAGATCAAGTGAAGGATAGATGCGTGCTAGCGGGAATGAATGGTGTGATTCGGAAACCGATCCTACTTCATCAGATAGCAGATGAACTTAGAACAGTCCTGCAGCGTGCGGGTGAAAAACTGTGA 2283 0.4131 MKILLLLLLLFFNLTLYATATEAEYDHCNCDDEEALFSIHTILVGQKVSDFFIAVAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGMTHLLNAYSYHGPPSFHLLLSITVAKFLTALVSCATALTLPPLIPLLLKIKVRELFLRQNVMELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKAFDLHNCAVWMPNEDRREMYLTHELKSDSGKSFHNSIPVIDPDVLEIRKTKGVKILRPESKLGAGSSGGGSGKELGAVAAIRMPMLHVSNFKGGTPELVDTCYAILVLVLPSSNSRVWTKQEMEIVEVVADQVAVALSHASVLEESHLMRQKLEEQNRALQQSQKNAMMASQARKSFQTVMSHGLRRPMHSVVGMLSLFQDGITRPEQKIIGDTMLKVGNVLSSLVNDVMDISDNKKGGLQLEMKPFLLHSMLREAASIAKCLCVYEGFGFEINVQKSLPEKVLGDEARTFQVIMHIIGYLLNTCDRGKLAFRVLLASDGGDKDDKKLGVWRSSSQVEYVNIKFDFQITGSSESDESISTKQHSSRRLYHNSESKEGLSFNMCRKLVQIMQGNIWISPNSDGLVQGMSLLLKFQTGPSLERYIFAPKDSSNSQFRGLKILLADDDGLNRIVTKKLLEKLGCQVTAVTSGFECLSAISSSANSFKIIMLDIHMPEMDGFEVATRIRKFNGPNWPLIIAVIANAEDQVKDRCVLAGMNGVIRKPILLHQIADELRTVLQRAGEKL 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00429 760 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 355 433 IPR036097 GO:0000155|GO:0007165
Car04g00429 760 SMART REC_2 634 749 IPR001789 GO:0000160
Car04g00429 760 Pfam GAF domain 185 334 IPR003018 GO:0005515
Car04g00429 760 SUPERFAMILY CheY-like 630 755 IPR011006 -
Car04g00429 760 PANTHER ETHYLENE RECEPTOR 4 753 - -
Car04g00429 760 SMART HisKA_10 370 435 IPR003661 GO:0000155|GO:0007165
Car04g00429 760 PIRSF Ethylen_sen_hybr_HK 1 760 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Car04g00429 760 Coils Coil 340 370 - -
Car04g00429 760 SUPERFAMILY GAF domain-like 186 337 - -
Car04g00429 760 SMART gaf_1 183 344 IPR003018 GO:0005515
Car04g00429 760 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
Car04g00429 760 CDD REC_ETR-like 634 749 - -
Car04g00429 760 ProSiteProfiles Histidine kinase domain profile. 377 614 IPR005467 -
Car04g00429 760 CDD HATPase_ETR2_ERS2-EIN4-like 476 608 - -
Car04g00429 760 Gene3D - 621 757 - -
Car04g00429 760 Gene3D - 334 432 - -
Car04g00429 760 CDD HisKA 368 430 IPR003661 GO:0000155|GO:0007165
Car04g00429 760 Pfam Response regulator receiver domain 636 747 IPR001789 GO:0000160
Car04g00429 760 PANTHER TWO-COMPONENT HISTIDINE KINASE 4 753 - -
Car04g00429 760 Gene3D - 173 333 IPR029016 -
Car04g00429 760 Gene3D - 434 612 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00429 Car-Chr4 4416740 4419967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00429 22 758 Miscellaneous Gene Families AT3G04580 60.829 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car04g00429 GAF 1.7e-10 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00429 K14509 - gmx:100811462 1188.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00429 04 4416740 4419967 Car04g00429 04 4416740 4419967 ECH