Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00428 ATGGAAGacaacaacgacaacaacaacCAAGTCACGACCTCACTGTTCGAGTTCGAACAGCAGAGCAAAACCCCCGTTACCGTTACCGTTAACGCCTCTCCTGTTAACGGTTTGTTAGATGGGTCCCACACCGACCCTCATTCTGTTACAGCTAACAAGAAGAAGCGTGGTAGACCCAGGAAGTACGAGTCTCCAGAGGAAGCTCTCGCCGCTAGGAAAGCTGCCGCTAAAACGTCGTCGTTTTCATCTCCCAACAACCCCAAAAAGTTCCATTCCAACTCTCTAGGAAATTCAAGAGAGGGATTCAATCTCCACATCGTTACTGTTGCTCCTGGTGAGGATGTTGGCCAAAAAATTATGTCGCTGATGCAAAAAAATAGTAGGTGTGAGATGTGCATTCTCTCTGCATCTGGTTCCGTCTCTAGTGCCACTCTTCGTCAGCCAGCAACCTCTGGAGGCAATATTACATATGAGGGTCGCTTTGACATTATTTCTCTTACTGGATCCTATGTCCATAATGAACTTGAAGGTCGTTCTGGTGGTCTAAGTGTATGCTTATCTCATTCTGATGGACAACTTATAGGTGGAAGCATTGCTGGACCCCTTAAAGCTGCTGATTCAGTTCAGGTCATTGTTGGCACATTTTCTATCAGTCCCAAGAACACTGGTGCTGGTATAAAAGGCGATGTTTCTACCAGCAAGTTACCATCACCAGTCGGTGAACCGGCATCAAGTTTAGGTTTCCGCTCATCAGCTGACACTGCCAATGGGAATACAACTCCAGGAAACAAGGAGCATCAAACTATTGGGGGAAGTCATTTCATGCTTCAGCAACATGGTGTGCACATGGCACCTTTCAATCCCTCAGACTGGGGAAGTCGTCCAGATTCAAGAAATGTTGCCTTTGAACTGATAGGAAGAACAGGTCATGGAGCACAGCAGTCTCCTGAGAATGGGGACTATTCCTGA 969 0.4592 MEDNNDNNNQVTTSLFEFEQQSKTPVTVTVNASPVNGLLDGSHTDPHSVTANKKKRGRPRKYESPEEALAARKAAAKTSSFSSPNNPKKFHSNSLGNSREGFNLHIVTVAPGEDVGQKIMSLMQKNSRCEMCILSASGSVSSATLRQPATSGGNITYEGRFDIISLTGSYVHNELEGRSGGLSVCLSHSDGQLIGGSIAGPLKAADSVQVIVGTFSISPKNTGAGIKGDVSTSKLPSPVGEPASSLGFRSSADTANGNTTPGNKEHQTIGGSHFMLQQHGVHMAPFNPSDWGSRPDSRNVAFELIGRTGHGAQQSPENGDYS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00428 322 ProSiteProfiles PPC domain profile profile. 98 238 IPR005175 -
Car04g00428 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 316 IPR039605 GO:0003680
Car04g00428 322 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 7 316 - -
Car04g00428 322 MobiDBLite consensus disorder prediction 1 46 - -
Car04g00428 322 MobiDBLite consensus disorder prediction 223 266 - -
Car04g00428 322 MobiDBLite consensus disorder prediction 1 96 - -
Car04g00428 322 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 216 IPR005175 -
Car04g00428 322 MobiDBLite consensus disorder prediction 76 96 - -
Car04g00428 322 CDD DUF296 103 215 IPR005175 -
Car04g00428 322 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 215 - -
Car04g00428 322 MobiDBLite consensus disorder prediction 247 266 - -
Car04g00428 322 Gene3D - 103 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00428 Car-Chr4 4408466 4413894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00428 46 321 AT-hook Motif Nuclear Localized (AHL) Family AT3G04590 43.925 6.64e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00428 - - gmx:100809675 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00428 04 4408466 4413894 Car04g00428 04 4408466 4413894 ECH