Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00421 ATGATGCATATGGAGAAAAATGTATCTGCATTATTTGTGATGTTGATATTAATATTATTTAGTCTTAACTTTTGTTTATCAGTAGGGCTTAATGCAGAGGGAAAATACCTTATGGAAATAAAATTGAGATTGTTTGACAAATACAATCATCTTGAGAATTGGAATTCAAGTGATTCCAATCCTTGTGGTTGGAATGGTGTCATCTGCAGCAATGAAACCAATAATCCAATGGTAGAATATCTTGACTTGCATGCAATGAATCTCTCAGGTTCTTTATCTTCCAGCATTGGTGGTTTGGTTCATTTGATTCACCTTAATCTTTCTCAAAATAGTTTATCTGGTTTCATACCAAAGGAAATTGGAAATTGTTTAAGTTTGAAGATTCTTGGTCTCAACAATAATCAATTTGAAGGTCGAATTCCTGTCGAAATAGGCCGGCTTTCGAATTTAACAGAATTGTATATTTTCAACAATCAACTTTCTGGTCCTTTGCCTTATGAAATTGGTAACCTTTCTTCACTCTCAATACTTATTGTATTCACAAATCATTTGACTGGTTCTTTGCCACCATCAATTGGTAAGCTTAAAAATTTGATCCGGTTTCGAGCCGGTCAGAATATGATCTCAGGAAGTTTACCACAAGAGATTGGTGGATGTGAGAGTTTGGAGTATCTTGGTTTGACTCAAAATCAGATAAGTGGTGAAATACCAAAAGAACTTGGAAAACTCAAAAACTTGCAATCTTTGGTCCTTAGGGAAAATAATCTTCATGGTGCTATACCTAAAGAGCTTGGAAATTGTACTAATTTAGAGGTACTTGCTCTCTATCAGAACAATCTTGTGGAAGCAATTCCAAAGGAGATTGGAAAACTTGCATTTCTAAAGAGACTATACCTTTACAGGAATGAGTTGACAGGAAATATTCCAAAAGAGATTGGTAACCTTTCTGTTGCAATAGAGATTGATTTTTCAGAAAATTTTCTAATAGGTGAAATACCAATTGAGTTGGTTAATATAAAAGGCTTGCAATTACTTCATCTTTTTCAAAACAAGTTAAGTGGTGTGATTCCAAATGAGTTCACCACTTTGAAAAATTTGACTGAGCTTGATCTCTCTATTAACTATCTCAATGGTACTATTCCTATTGGATTTCAAAACTTGACAAAACTTACCTCTTTGCAACTCTTCAATAACTCATTAAGTGGTATAATTCCTCATGAATTGGGAGCAAATAGTCCACTTTGGGTGCTTGATTTGTCATACAACTTCTTGGTGGGAAGAATTCCAATCCATCTTTGTCAACAATCTAAATTGATGCTGTTGAACTTAGGATCAAACAAACTCACTGCAAATATCCCTTATGGACTCACAAGTTGTAAGTCCTTGGTGTATCTTCGCCTTTTCGATAACAACTTCAAGGGTAGGTTTCCTTCTAATTTATGCAAGCTTGTAAATCTTTCTACAGTTGAATTGGAACAGAATGAATTCACAGGCCACATTCCTCCACAAATTGGTAACTGCAAAAACTTGCAAAGACTTCACCTTTCTAATAACCACTTTTTGTCTCAATTGCCAAAGGAAATTGGCAACCTCTCTCAATTAGTTTCTTTCAATGTCTCATCAAATTACCTTTTTGGTAAAGTTCCTATGGAACTTTTCAACTGCAAGCAGCTCCAAAGACTTGATCTTAGTCACAACAACTTTATAGGTACTTTACAAGGCGAGATAGGAACTCTTTCACAATTAGAGCTTCTTAGGCTCTCACATAACAATTTTACTGGTAAAATTCCACTGGCATTAGGAAAACTCTTGAGATTAACTGAGCTACAAATGAGTGAAAACTCATTTTGTGGCTACATTCCACAAGAGTTAGGTGCACTCTCATCTTTGCAAATTGCATTGAATCTCAGCTATAATAAACTTTCAGGCCAAATACCCTTTGAACTTGGGAATCTTATTATGCTAGAATCCCTCCAACTCAATAACAACCATCTGAGTGGTGAAATTCCAAACTCCTTTAATAGACTTTCAAGTTTACTTTCATTCAATTTCTCATACAATGATCTTATTGGCCCTTTACCTTCTTTACCTCTCTTTCAAAACTCAAAATTCAGTTGCTTTTTAAGGAACAAAGGACTATGTGGAGGACAGCTTGCCCCTTGTCCAAATTCACTTTCACACACCCCTCCAAATAAACTAGGAAAGATTCTTGCTATAGGTGCAGCTATTGTTAGTGTTGTTTCTTTGGTTTTAATTCTAGTCATTATATATCTCATGAGAAGTTCCTTTGTGTCAAAGCAAGATATAATTGATAAAAAAAATTCTCCACATGTTTCAAACATGTACTTCTTCCCAAAAGAAGAGTTAACTTTCCAAGACATGGTTGAAGCAACTGAAAATTTTCATTCCAAATATGTAATTGGGAAAGGTGGTAGTGGAACTGTCTATAGAGCTGATATATCAACTAGTGATCATATAAATGCAATTGCTGTAAAGAAACTTACATCAAACAGTCACAACAACAGCATTGATGTAAAGGGCTGCTTCCATGCTGAAATATTAACTTTGGGAAAAATAAGGCATAGAAATATTGTGAAACTATATGGTTTCTGCAACTATAGTGGATCTAATATGCTACTTTATGAGTACATGGAAAAGGGTAGTTTGGGAGAGTTACTTCATGGAGGAACATGTTCCTCTAGTCTTCATTGGCATgacaggtttaggattgcacttggaactgcacaaggactatcttatttgcaccatgattgcaagccgagaattatccaccgcgatatcaagtcgaataatatacttgttgatcatgaatttgaagctcatgttggagattttggtttggctaagttgATTGATATCTCAAGGTCTAAATCAGTGTCTGCAGTTGTTGGTTCTTATGGCTACATTGCCCCTGAGTATGCTTACACAATGAAAGTGACAGAAAAATGCGATGTCTATAGCTATGGAGTTGTCTTATTGGAGTTACTAACAGGAAAGAAACCAGTCCAATCGTTGGATCAAGGTGGTGGTGATCTTGTAACATGGGTGACAAATCGTATCAACAAATATTCGTTGAAATTGGACATCCTTGATGCTAGATTGGACCTACTACATGAAATTGATGTTGCACAAATATTTGATGTATTAAAAATTGCATTACTATGCACCGACATATCTCCTTCTAGACGCCCAACTATGCGTAAAGTTGTGGCAATGCTTACAAGTTCTAGCAAACGGAAAGAGCAATCTTCTTTCTCTCCATGTCAACAATCATCTAATGTAGAAGAATGA 3312 0.337 MMHMEKNVSALFVMLILILFSLNFCLSVGLNAEGKYLMEIKLRLFDKYNHLENWNSSDSNPCGWNGVICSNETNNPMVEYLDLHAMNLSGSLSSSIGGLVHLIHLNLSQNSLSGFIPKEIGNCLSLKILGLNNNQFEGRIPVEIGRLSNLTELYIFNNQLSGPLPYEIGNLSSLSILIVFTNHLTGSLPPSIGKLKNLIRFRAGQNMISGSLPQEIGGCESLEYLGLTQNQISGEIPKELGKLKNLQSLVLRENNLHGAIPKELGNCTNLEVLALYQNNLVEAIPKEIGKLAFLKRLYLYRNELTGNIPKEIGNLSVAIEIDFSENFLIGEIPIELVNIKGLQLLHLFQNKLSGVIPNEFTTLKNLTELDLSINYLNGTIPIGFQNLTKLTSLQLFNNSLSGIIPHELGANSPLWVLDLSYNFLVGRIPIHLCQQSKLMLLNLGSNKLTANIPYGLTSCKSLVYLRLFDNNFKGRFPSNLCKLVNLSTVELEQNEFTGHIPPQIGNCKNLQRLHLSNNHFLSQLPKEIGNLSQLVSFNVSSNYLFGKVPMELFNCKQLQRLDLSHNNFIGTLQGEIGTLSQLELLRLSHNNFTGKIPLALGKLLRLTELQMSENSFCGYIPQELGALSSLQIALNLSYNKLSGQIPFELGNLIMLESLQLNNNHLSGEIPNSFNRLSSLLSFNFSYNDLIGPLPSLPLFQNSKFSCFLRNKGLCGGQLAPCPNSLSHTPPNKLGKILAIGAAIVSVVSLVLILVIIYLMRSSFVSKQDIIDKKNSPHVSNMYFFPKEELTFQDMVEATENFHSKYVIGKGGSGTVYRADISTSDHINAIAVKKLTSNSHNNSIDVKGCFHAEILTLGKIRHRNIVKLYGFCNYSGSNMLLYEYMEKGSLGELLHGGTCSSSLHWHDRFRIALGTAQGLSYLHHDCKPRIIHRDIKSNNILVDHEFEAHVGDFGLAKLIDISRSKSVSAVVGSYGYIAPEYAYTMKVTEKCDVYSYGVVLLELLTGKKPVQSLDQGGGDLVTWVTNRINKYSLKLDILDARLDLLHEIDVAQIFDVLKIALLCTDISPSRRPTMRKVVAMLTSSSKRKEQSSFSPCQQSSNVEE 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00421 1103 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Car04g00421 1103 Gene3D Transferase(Phosphotransferase) domain 1 884 1101 - -
Car04g00421 1103 SMART LRR_typ_2 243 267 IPR003591 -
Car04g00421 1103 SMART LRR_typ_2 363 386 IPR003591 -
Car04g00421 1103 SMART LRR_typ_2 508 531 IPR003591 -
Car04g00421 1103 SMART LRR_typ_2 579 603 IPR003591 -
Car04g00421 1103 SMART LRR_typ_2 387 411 IPR003591 -
Car04g00421 1103 SMART LRR_typ_2 147 171 IPR003591 -
Car04g00421 1103 SMART LRR_typ_2 652 675 IPR003591 -
Car04g00421 1103 SMART LRR_typ_2 483 507 IPR003591 -
Car04g00421 1103 SMART LRR_typ_2 291 315 IPR003591 -
Car04g00421 1103 SMART LRR_typ_2 99 123 IPR003591 -
Car04g00421 1103 Pfam Protein kinase domain 802 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00421 1103 SUPERFAMILY L domain-like 47 401 - -
Car04g00421 1103 Gene3D Phosphorylase Kinase; domain 1 763 883 - -
Car04g00421 1103 MobiDBLite consensus disorder prediction 1081 1103 - -
Car04g00421 1103 Gene3D Ribonuclease Inhibitor 29 182 IPR032675 -
Car04g00421 1103 Gene3D Ribonuclease Inhibitor 183 278 IPR032675 -
Car04g00421 1103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 929 941 IPR008271 GO:0004672|GO:0006468
Car04g00421 1103 Gene3D Ribonuclease Inhibitor 279 383 IPR032675 -
Car04g00421 1103 SMART serkin_6 801 1080 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00421 1103 ProSiteProfiles Protein kinase domain profile. 801 1092 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00421 1103 PANTHER LRR RECEPTOR-LIKE KINASE 10 1092 - -
Car04g00421 1103 Pfam Leucine Rich Repeat 101 123 IPR001611 GO:0005515
Car04g00421 1103 SUPERFAMILY RNI-like 322 694 - -
Car04g00421 1103 Gene3D Ribonuclease Inhibitor 384 728 IPR032675 -
Car04g00421 1103 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 1092 - -
Car04g00421 1103 SUPERFAMILY Protein kinase-like (PK-like) 775 1080 IPR011009 -
Car04g00421 1103 ProSitePatterns Protein kinases ATP-binding region signature. 807 833 IPR017441 GO:0005524
Car04g00421 1103 Pfam Leucine rich repeat 341 400 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00421 Car-Chr4 4321166 4325548 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00421 6 1081 Receptor kinase-like Gene Family AT1G17750 38.940 0.0 635
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car04g00421 Pkinase 5.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00421 - - adu:107465566 1492.63