Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00418 ATGgaaaacgaagagaagaagaagaagaaAACATTTGCGTTGATGAAGGAAAAGTTGAAGGAAGTTGTCAATAGTATTGTTGAAGGAGATGACTTCACTCTTCACGCTGCGGATGAAGCTATCACTGCTCTTTCTGTTCTCAGGGACTTCAAATGCAGCAGCGCTTCTTTTTCTTCTAAATTCGACCTTTTGTCTTTTCCTGTTCCTGTTTCTGTTCCTCCACAGTTTCGATGCCCCATCTCAGGTCACATTATGACTGATCCTGTTATCTTGGCCAATGGACAGACTTATGATAGACCATTCATTCAGAGATGGCTGAATGAAGTCCACAAAATTTGTCCTCAAACTCAACATGTCCTCTCTCACTCCATTCTTTCTCCTAATTATTTAGTCTATGACATGATCTCAAGGTGGTGTAAGGACCAAGGAATTGAGCTACCAATGCCTGTTGGGGACATTGAAAATGGACAAGTAACAGAAGCACACAAATATCGTCTGCGTTTGCTGCTTCACAAACTTTCATTATCTACATTGGATCAAAAAGAAGCCGCGAGAGAGATTCGTATGTTAGCGAACCGAATGCCATCGTTTCGAACACTCTTTGGTGACTCAGAGGTGATTCAAAAATTGCTCATTCCGTTATCGCCTGGTGTTGATTGTGTCGATCCAGAACTGCACGAGGACTTGATCACATCTGTTCTAAATCTCTCAATCAATGATAACAACAAGAGAGTTTTCGCAGAGGACGAAAAGCTTATGTCATTTATCATTGATTCATTGAAATCAGGAACAATTCAAACGAGAAGCAACGCTGCAGCAGCTATTTTCTCGTTATCAGCTGTTGATATCAACAAACACATCATTGGAAAAACTGGTGCTATCAAGTATTTGGTTGATCTTTTAGAAAAGGGACACCCATCAACAATGAAAGATGCTGCTTCAGCTATATTCAATCTATGTATTGCACAAGAGAATAAAGCGAGGACAGTTCGAGAAGGTGCGGTTCAGGTTATTCTAAGCAAGATCATCATGGACCATGTTCTGGTTGACGAGTTTTTAGCTCTATTGGCACTTCTGTCTAGCCATTCCAAAGCTATTCAAGCGTTGGGAAGTCACGGTGCCGTCCCTTTCTTTATGGATATTTTAAGAGATAGCAGCGTTTCGGATCGAAGCAAGGAGAACTGTGTTGCAATCTTGTACATAATATTTTTCAATGATAAAACAAAGAGGAAGGAAATAAAAAATGATGAAATAGTTAATGGTACACTAGCTACGCTTGCGCAATGTGGAACTTCAAGAGCTAAGAGGAAAGCTTGTGGTATTCTTGATAGGCTCAAGTTATCTCAGTCCTCAAAGCACACTACTTGA 1368 0.3969 MENEEKKKKKTFALMKEKLKEVVNSIVEGDDFTLHAADEAITALSVLRDFKCSSASFSSKFDLLSFPVPVSVPPQFRCPISGHIMTDPVILANGQTYDRPFIQRWLNEVHKICPQTQHVLSHSILSPNYLVYDMISRWCKDQGIELPMPVGDIENGQVTEAHKYRLRLLLHKLSLSTLDQKEAAREIRMLANRMPSFRTLFGDSEVIQKLLIPLSPGVDCVDPELHEDLITSVLNLSINDNNKRVFAEDEKLMSFIIDSLKSGTIQTRSNAAAAIFSLSAVDINKHIIGKTGAIKYLVDLLEKGHPSTMKDAASAIFNLCIAQENKARTVREGAVQVILSKIIMDHVLVDEFLALLALLSSHSKAIQALGSHGAVPFFMDILRDSSVSDRSKENCVAILYIIFFNDKTKRKEIKNDEIVNGTLATLAQCGTSRAKRKACGILDRLKLSQSSKHTT 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00418 455 CDD RING-Ubox_PUB 76 117 IPR045210 -
Car04g00418 455 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 145 IPR013083 -
Car04g00418 455 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 7 449 - -
Car04g00418 455 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 292 334 IPR000225 GO:0005515
Car04g00418 455 ProSiteProfiles U-box domain profile. 71 145 IPR003613 GO:0004842|GO:0016567
Car04g00418 455 SUPERFAMILY RING/U-box 69 145 - -
Car04g00418 455 SUPERFAMILY ARM repeat 176 445 IPR016024 -
Car04g00418 455 Gene3D - 168 453 IPR011989 -
Car04g00418 455 PANTHER U BOX DOMAIN-CONTAINING 7 449 - -
Car04g00418 455 Pfam U-box domain 72 142 IPR003613 GO:0004842|GO:0016567
Car04g00418 455 Pfam Armadillo/beta-catenin-like repeat 284 320 IPR000225 GO:0005515
Car04g00418 455 SMART arm_5 280 321 IPR000225 GO:0005515
Car04g00418 455 SMART arm_5 362 404 IPR000225 GO:0005515
Car04g00418 455 SMART Ubox_2 75 138 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00418 Car-Chr4 4292427 4294030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00418 134 454 U-box Gene Family AT3G07360 48.328 6.29e-92 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00418 - - gmx:100806132 529.635