LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car04g00410	ATGTTCAAATTCTTGAAAGAGGTTGTTGGTGGATCTGGAACTGGCATCAAGGATCTCCCATACAATATCGGCGAACCTTACCCTTCCGCTTGGGGCTCTTGGCTTCATCACCGCGGCACCTCCAAGGATGATGGTTCTCCGGTTTCAATTTTTTCTCTATCTGGAAGCAATGCTCAGGATGGACATTTAGCTGCTGGTCGAAACGGTGTCAAGCGTCTACGCACTGTTAGGCATCCAAATATTTTGTCATTTCTTCATAGTACTGAGATCGAAACTTTTGATGGCGGTTCTTCTAAGGTCACGATTTATATTGTGACAGAACCTGTAATGCCACTGTCAGATAAGATTAAAGAGTTAGGTCTTGAAGGTACACAAAGGGATGAATATTATGCTTGGGGCCTGCATCAGATCGCGAAAGCTGTGAGCTTCTTAAATAATGATTGTAAACTTGTTCATGGTAATGTCTGCTTGGCTAGTGTTGTCGTCACACAAACTTTGGACTGGAAACTCCATGCATTTGATGTTCTATCAGAGTTTGATGGGAGTAGTGAAGCATCCTCCGGGCAAATGCTGcaatacgcatggcttgttgcagcacagtacaaatcaatggagctggcaaaatctgactgggctgtaattaagaagtctcctccatgggccattgattcttggggcatggGCTGTCTAATCTATGAGCTATTCTCTTGTTTGAAGTTGAGCAAAACAGAGGAGTTACGGAACACTGCCTCCATTCCCAAGTCTCTGCTTCCAGATTACCAGCGGCTATTGAGTTCCACACCTTCTCGTAGATTAAATACATCAAAGCTTATAGAAAACAGTGAGTATTTTCAAAATAAGTTGGTAGACACAATACATTTCATGGAAATTCTCAGTTTGAAAGATAGTGTTGAGAAGGACACCTTCTTCCGCAAGCTTCCAAATTTAGCAGAGCAGCTTCCTCGTCAGATTGTGTTAAAGAAGTTACTTCCTTTATTAGCTTCTGCCCTTGAATTTGGTTCAGCTGCTGCTCCCGCTTTGACTGCATTGTTGAAAATGGGTTCTTGGCTTTCAGCTGAGGAGTTTCGTGTCAAGGTTCTTCCAACAATAATTAAACTCTTTGGTTCCAATGATCGAGCTGTTCGTGTCAGCCTTCTTCAACATATTGATCAATACGGAGAGTCATTATCAGCTCAAGCTGTTGATGAACAGGTTTACCCTCATGTTGCTACTGGTTTCTCTGATACATCTGCTTTTCTGAGGGAACTTACTCTCAAGTCCATGTTAGTTCTGGCTCCGAAGCTGTCTCAAAGGACCTTGTCTGGGTCATTATTAAAGCATCTGTCGAAGTTACAGGTTGATGAAGAACCAGCGATACGAACAAATACTACTATCTTGCTAGGAAATATTGCAAGCTACTTAAACGAAGGGACAAGAAAAAGAGTGTTGATTAATGCATTTACAGTCCGTGCTTTACGCGATACATTTCCACCTGCTAGAGGAGCAGGCATTATGGCTTTATGTGCCACCAGTTCCAACTATGACATCACTGAAATTGCCACTCGGATTCTTCCTAATGTCGTTGTACTCACAATTGATCCTGACAGTGATGTTCGATCTAAGGCATTTCAAGCTGTTGATCAATTTTTGCAGATGGCAAAGCAACATTATGAAAAGACAAATATAGCAGAGGCTACTGGGGGTTCAGGCATGGGAAGCTCATCAATTCCAGGAAATGCAAGTTTACTTGGATGGGCTATGAGCTCCTTGACCCTGAAGACCAAACCTTCTGATCATGCTCCAGTTGCTTCTGTTAGTTCTAGTGTCCTTACACCAACATCTTCTAATGCCAGCTCAGCTATAGATACTCCTTCAACAGCCCCTATCCGTGTACATTCCACACCAGATTTCACTGAGCACCATGCCCCTACATCTCCTACATCAACTGATGGCTGGGGGGAACTAGAGAATGGAATCGATGAGGAGCCTGAAAATGACAAGGATGGGTGGGATGATCTAGAACCACTAGAAGAAGCAAAGCCAACTCCAGCTCTTACTAACATTCAAGCAGCTCAAAGGCGGCCAGTTTCCCAACCTGTTTCACAGACAAAAGCTTCAAGTTTACGACCCAAAATTACACCGAAGTTGAACAAGGATGAAGACGATGATTTGTGGGGTGCCATAGCAGCTCCTGCTCCAAAAACAGCAAAACCTTTAAATTTGAAATCAACTGCAACTGATGATGATGATCCCTGGGCTGCCATTGCAGCTCCTGCACCCTCTACCAGGGCTAAGCCCTTATCAGCTGGCAGAGGTCGAGGAGCGAAACCTGCTGCTACAAAATTAGGTGCTCAACGGATAAACCGGACATCATCCGGGATCTAA	2385	0.4172	MFKFLKEVVGGSGTGIKDLPYNIGEPYPSAWGSWLHHRGTSKDDGSPVSIFSLSGSNAQDGHLAAGRNGVKRLRTVRHPNILSFLHSTEIETFDGGSSKVTIYIVTEPVMPLSDKIKELGLEGTQRDEYYAWGLHQIAKAVSFLNNDCKLVHGNVCLASVVVTQTLDWKLHAFDVLSEFDGSSEASSGQMLQYAWLVAAQYKSMELAKSDWAVIKKSPPWAIDSWGMGCLIYELFSCLKLSKTEELRNTASIPKSLLPDYQRLLSSTPSRRLNTSKLIENSEYFQNKLVDTIHFMEILSLKDSVEKDTFFRKLPNLAEQLPRQIVLKKLLPLLASALEFGSAAAPALTALLKMGSWLSAEEFRVKVLPTIIKLFGSNDRAVRVSLLQHIDQYGESLSAQAVDEQVYPHVATGFSDTSAFLRELTLKSMLVLAPKLSQRTLSGSLLKHLSKLQVDEEPAIRTNTTILLGNIASYLNEGTRKRVLINAFTVRALRDTFPPARGAGIMALCATSSNYDITEIATRILPNVVVLTIDPDSDVRSKAFQAVDQFLQMAKQHYEKTNIAEATGGSGMGSSSIPGNASLLGWAMSSLTLKTKPSDHAPVASVSSSVLTPTSSNASSAIDTPSTAPIRVHSTPDFTEHHAPTSPTSTDGWGELENGIDEEPENDKDGWDDLEPLEEAKPTPALTNIQAAQRRPVSQPVSQTKASSLRPKITPKLNKDEDDDLWGAIAAPAPKTAKPLNLKSTATDDDDPWAAIAAPAPSTRAKPLSAGRGRGAKPAATKLGAQRINRTSSGI	794

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car04g00410	794	MobiDBLite	consensus disorder prediction	596	652	-	-
	Car04g00410	794	Gene3D	Transferase(Phosphotransferase) domain 1	110	280	-	-
	Car04g00410	794	Gene3D	-	282	561	IPR011989	-
	Car04g00410	794	SUPERFAMILY	Protein kinase-like (PK-like)	37	287	IPR011009	-
	Car04g00410	794	SUPERFAMILY	ARM repeat	293	552	IPR016024	-
	Car04g00410	794	MobiDBLite	consensus disorder prediction	596	794	-	-
	Car04g00410	794	MobiDBLite	consensus disorder prediction	655	672	-	-
	Car04g00410	794	PANTHER	SCY1-RELATED S/T PROTEIN KINASE-LIKE	1	792	-	-
	Car04g00410	794	SMART	serkin_6	2	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car04g00410	794	PANTHER	-	1	792	-	-
	Car04g00410	794	ProSiteProfiles	Protein kinase domain profile.	2	284	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Car04g00410	794	ProSiteProfiles	HEAT repeat profile.	366	404	IPR021133	-
	Car04g00410	794	Gene3D	Phosphorylase Kinase; domain 1	12	107	-	-
	Car04g00410	794	MobiDBLite	consensus disorder prediction	685	710	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car04g00410	70	291	MAP Kinase Kinase Kinase	AT5G66850	25.630	1.33e-06	50.1

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	SCY1_SCYL1	Car04g00410		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car04g00410	K08876		-	gmx:100792884	1342.79