Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00407 ATGGAATTCCACCCCACAATTCCCATCTCCCAACCTTCCTTCACTCCCGAAGGTTCACTGTGGATGATGAAATTGAGGTCAACTCAAACATTCATGGATTCTCAATTTTATCCACACCGTCCAGGGGAGCCAGATTGTTCATATTACATCCGAACAGGACTCTGTAGATTCGGTGCCACCTGTCGATTTAACCATCCTCCTAACGCTAACTTGGCTATTGTCACTGCACGGATGATTGGCGAGTTCCCAGAAAGAATAGGGCAACCAGAATGTCAGTTCTATCTGAAGACAGGAACTTGCAAATTTGGTGCCACATGCAAATTTCATCATCCTAGAGACCAAGCTGGGATTTCTGGAAGAGTTGCATTAAATATTTTAGGCTATCCACTCCGTCCTACTGAAGCTGAATGCAGCTATTATTTGAGAACAGGAGAATGCAAATTTGGGAACACATGCAAATTCCACCATCCTCAACCAAGTAATAATATGACGATTCCATTAAAGGGTTCTCCTATTTACCTTTCTACTGTCCATTCTCCAACCCCACAAGTCCGAGGATTTGCAAATTGGCCGAGAGCATCATACGGTCCTTCAAGTTATACACCTTTAGTTATGCCTCAAGGAGTGATTTCCGTGCCTGGATGGAGTGCGTACAGTGGCCAAATGGGATCAGTGATCTCTACTCCTCCAGGCAGTCCATTGCAGAGGGAAAACATATTTCCTGACAGACCCGGTCAGCCCGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTCGGCGCAGTTTGTCGATTCCACCACCCACATCAGAGACTAATTCCTGTTCCTCCTGACTGTCTCTTGAGTTCCTTAGGCCTTCCTTTACGTCATGGAGAGCCTTTGTGTGTCTTCTATTCGCGCTATGGAATATGCAAATTTGGACCAAGTTGCAAGTTTGATCACCCAATGGGAATTTTCAGCTATAATTTATCTGCATCTCCTTTGGCGGATTCCACTGGCAGGCATCTGTTAGGATCTTCATCGGCAACTGCTGCATTAAATTTATCATCCCAAGGACTTGTTGAGTCAAGCTCAGCAAAGCCTAGGAGGCTTTCAATATCAGAGACAAGACATATTCCTTCtggtgatgatgatgatgataatgacaacattgatgaagatggatga 1170 0.4308 MEFHPTIPISQPSFTPEGSLWMMKLRSTQTFMDSQFYPHRPGEPDCSYYIRTGLCRFGATCRFNHPPNANLAIVTARMIGEFPERIGQPECQFYLKTGTCKFGATCKFHHPRDQAGISGRVALNILGYPLRPTEAECSYYLRTGECKFGNTCKFHHPQPSNNMTIPLKGSPIYLSTVHSPTPQVRGFANWPRASYGPSSYTPLVMPQGVISVPGWSAYSGQMGSVISTPPGSPLQRENIFPDRPGQPECQFYMKTGDCKFGAVCRFHHPHQRLIPVPPDCLLSSLGLPLRHGEPLCVFYSRYGICKFGPSCKFDHPMGIFSYNLSASPLADSTGRHLLGSSSATAALNLSSQGLVESSSAKPRRLSISETRHIPSGDDDDDNDNIDEDG 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00407 389 ProSiteProfiles Zinc finger C3H1-type profile. 290 318 IPR000571 GO:0046872
Car04g00407 389 SUPERFAMILY CCCH zinc finger 292 317 IPR036855 GO:0046872
Car04g00407 389 ProSiteProfiles Zinc finger C3H1-type profile. 131 159 IPR000571 GO:0046872
Car04g00407 389 ProSiteProfiles Zinc finger C3H1-type profile. 85 113 IPR000571 GO:0046872
Car04g00407 389 Gene3D - 38 118 - -
Car04g00407 389 Gene3D - 242 325 - -
Car04g00407 389 ProSiteProfiles Zinc finger C3H1-type profile. 40 68 IPR000571 GO:0046872
Car04g00407 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 245 269 IPR000571 GO:0046872
Car04g00407 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 293 317 IPR000571 GO:0046872
Car04g00407 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 88 112 IPR000571 GO:0046872
Car04g00407 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 158 IPR000571 GO:0046872
Car04g00407 389 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 42 67 IPR000571 GO:0046872
Car04g00407 389 ProSiteProfiles Zinc finger C3H1-type profile. 243 271 IPR000571 GO:0046872
Car04g00407 389 Gene3D - 119 165 - -
Car04g00407 389 SUPERFAMILY CCCH zinc finger 248 273 IPR036855 GO:0046872
Car04g00407 389 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 15 228 - -
Car04g00407 389 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 235 383 - -
Car04g00407 389 SUPERFAMILY CCCH zinc finger 134 160 IPR036855 GO:0046872
Car04g00407 389 SMART c3hfinal6 243 270 IPR000571 GO:0046872
Car04g00407 389 SMART c3hfinal6 131 158 IPR000571 GO:0046872
Car04g00407 389 SMART c3hfinal6 85 112 IPR000571 GO:0046872
Car04g00407 389 SMART c3hfinal6 290 317 IPR000571 GO:0046872
Car04g00407 389 SMART c3hfinal6 40 67 IPR000571 GO:0046872
Car04g00407 389 SUPERFAMILY CCCH zinc finger 44 68 IPR036855 GO:0046872
Car04g00407 389 PANTHER PROTEIN PHOSPHATASE RELATED 235 383 - -
Car04g00407 389 PANTHER PROTEIN PHOSPHATASE RELATED 15 228 - -
Car04g00407 389 MobiDBLite consensus disorder prediction 356 389 - -
Car04g00407 389 SUPERFAMILY CCCH zinc finger 89 114 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00407 Car-Chr4 4204837 4208267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00407 20 387 C2H2 Transcription Factor Family AT3G02830 53.365 2.58e-149 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car04g00407 zf-CCCH 1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00407 - - gmx:100790771 573.548