Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00406 ATGATGAAAAACAAGAACAACAAGAATGAAATCAAAATACTGAATTTTGATGCTGGTTCTTCTGCAAAAGTGAACACCAAGAAGAAATGGTATCCCATCGATTTAAATGTAGAGGCTCCTCCTTCTCCTGATTATTCTCAGGATTGTGGTGATGGTGGCGACGTGGCAATGGGAGGAGTTGGTGATGTTGAAGTTGAAGAAGGTGTGAATGTGGTTAACTCTGAAATTCTGAAGGCTAAGAAAGGTAAGATGCCGATGATTTGTTCGGAAGTTGGAGATGCAGCTGTTGTGGTTGAAGGAGTGAATGATGAAATGATGCTTCGCCGCCAGGATGATGTTGCTAATGGATCTCGTCTTCAAAGGAAGAGGAAGAGAGATTTTTCTGAATACTATATCCCACCTGGTAGCAGGTTGTGCCGTGGACCAAAAGCAGTGATAAGAGTTGAAAGCAGTTATGATTACGTGGAAGATGGTTATCGGTGGCGTAAGTATGGAAAGAAGGCAATCAAAGGAAGTCCAAACCCTAGGGGATATTTCAGGTGCGCTACACAAGGATGCAATGTGAGAAAACAAGTGGAAAGGGACATTCGCAATCCAAGATTTGTTATCTCTACCTATGAAGGAAAACACAAGCATCCCGTTCCCACCTCTAAATTCAAATTCACCAACTCAACCATTGCTGCTCTTTCAATTCCAATCAAGACTACTTCAACTGCCACTAACAATATCCCAATATTCCCACCCCAACAACCATCGCCAATGCCATTTTCTCTTCATCATCGCTATTCCAATTCACATGCCACCCCCATCACTAATAACTATCTTTGGCGCCCCAATTATTATAATTTCTTCAATCATGCTAATAATACCACCAGGCCCCATACTTCTGGACTCAATTTCCATCATCCTTAtgctcttgctgctcctgctgctcctactgctcctactCATCATCGACCTATTATTGGTGGATCGGTTAATCGTGGATTTCCACCGCTTGATCGTGCTCCAGATTTTCTCCAGCTGGGTGGCTACGGTGTCAAGGCTGCACCCGCTGCTCAACTTCCTCTCAATTAA 1077 0.415 MMKNKNNKNEIKILNFDAGSSAKVNTKKKWYPIDLNVEAPPSPDYSQDCGDGGDVAMGGVGDVEVEEGVNVVNSEILKAKKGKMPMICSEVGDAAVVVEGVNDEMMLRRQDDVANGSRLQRKRKRDFSEYYIPPGSRLCRGPKAVIRVESSYDYVEDGYRWRKYGKKAIKGSPNPRGYFRCATQGCNVRKQVERDIRNPRFVISTYEGKHKHPVPTSKFKFTNSTIAALSIPIKTTSTATNNIPIFPPQQPSPMPFSLHHRYSNSHATPITNNYLWRPNYYNFFNHANNTTRPHTSGLNFHHPYALAAPAAPTAPTHHRPIIGGSVNRGFPPLDRAPDFLQLGGYGVKAAPAAQLPLN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00406 358 Pfam WRKY DNA -binding domain 156 213 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g00406 358 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 120 304 - -
Car04g00406 358 SMART WRKY_cls 155 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g00406 358 Gene3D WRKY domain 141 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car04g00406 358 SUPERFAMILY WRKY DNA-binding domain 149 215 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car04g00406 358 ProSiteProfiles WRKY domain profile. 150 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g00406 358 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 120 304 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00406 Car-Chr4 4198881 4201463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00406 140 216 WRKY Transcription Factor Family AT4G18170 58.442 3.00e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car04g00406 WRKY 3.6e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00406 - K13424 cam:105851868 653.669