Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00400 ATGACGTCGTTGATGGGGACCGAGCTTATGAGGATATGTGTTAAAGAAGATAACGACGATTTTCCATCAGTTCCACCAGGTTTTGAGTCATATACATCTTTCTCACTGAAGAGGGTAGAAGAGAATGAGAAACACAATGATACAAATTTGACCAGTTCCTCTACAAGTGCTTCTGAATCACAGTCAAATCAAATCGGAAATGGTGTTCAATTTGCTGATACTTCAAAGGTTTCTAGATCCCTTCGACGAAGACCATGGATTAACCACGGACAGTGTGAGAACGGTTTAGAGGAAGACTCTGATTGTGAACGACATGATCAAAATTTCTCCTCGAGATCTTGTCTTCCTAAAGGAGTCATCCGAGGCTGTCCAGATTGCAGTAATTGCCAACAGGTCATTGCCAGATGGCGACCAGAAGATGCTCGTAGGCCAAATCTTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGTATTCGCTCCAGAGCTGAACCATATGGAATTTGTCGTATTGTTCCCCCACGTTCATGGAAACCTACTTGTCCTCTCAAGGAGAAAAGTATATGGGAGGGTTCTAAATTTGCTACTCGTGTTCAGAGGATTGACAAGCTTCAGAATCGTGGTTCAGGGAGTAAGAAGTCAAGGATTCAAAATAATATGAAAAGGAAAAGGAGAAGATGCACAAGAATAGGAGTGAATAATGGCACTGGAACAGGACCTAATGAAGAATTTTGTGAAGTTGAAAGGTTTGGGTTTGAACCTGGTCCGGAATTTACCTTGGAAACATTTAAGAGATATGCAGATGATTTTAAAGTCAAATACTTCAGAAATGAGAATGCATCTCATTCAAGTGCTCATGCAACAATTTTAAATGGTACCTCGGAGCCTTCTGTGGAGAAAATTGAGGGTGAATACTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACCGGGATTTTTGGGAGTGGTTTTCCTAGCAAGTCTAGTCAAGTTTCTGTTTCACATGAACAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCAAGGTTACCTGGGTCTTTGCTCTCTTATGAAACGAGTGACATATCTGGTGTTGTAGTGCCATGGTTATATATAGGAATGTGCTTTTCCTCATTTTGTTGGCATGTGGAGGACCACCATTTATATTCATTGAATTATATGCATTGGGGTGCTCCGAAAATGTGGTATGGTGTCCCTGCAATAGATGCATGCAAATTGGAAGAGGCCATGAGAAAGCATTTACCTGAACTTTTTGAAGATCAACCTGACTTGCTTCATAAGCTGGTCACACAGCTTTCTCCTTCGATTCTTAAGTCTAAAGGTGTACCAGTTTATAGGTGTGTCCAAAACCCTGGGGActttgttctgacatttcctcgagcctaccactctgggttcaattgtggcttcaactgcgctgaggctgttaatGTAGCTCCTGTTGACTGGCTGCCCCATGGGAATATTGCTATAGAGCTGTACCGGGAGCAGGGGCGCAAGACTTCCATATCTCATGATAAGCTGTTGCTTGGGGCTGCTAGGGAAGCCGTACGAGCCCAATGGGAGATTAATTTGCTGAAGAAAAACACTTTGGGTAATCTTAAATGGAAAGATGTCTGTGGAAAGGATGGTCTTTTGGCAAAAGCATTCAAGACACGTGTTGAGATGGAGCGAGTAAGAAGGGAATTTCTCTGCGGTAATTCACGGGCGTTAAAAATGGAGAGTAGTTTTGATGCTACGAGTGAAAGGGAATGCAACATCTGCTTATTTGATTTACACCTATCTGCTGCTGGCTGCCAGTGTTCTGCAGATAGATATGCCTGCTTGGATCATGCAAAGCAATTTTGTTCATGCCCTTGGAGCTCCAAATTTTTCCTCTTTCGTTATGATGTTAGTGAACTAAATATTCTTGTTGATGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAACTAGATCTCGGGCTGGCACTAACTTCTTATGTTTCAGTAGATAAAAAAACAGTACTTCAGGAATTGAAATCGCATTCATCCAACTCATCTCATTCTTCCAGGGCCAATGTGAATAAAGAGGAGGGTTTGCATCCATCAAATAAACTTATGGACAATTCTCAATTGATAGATGTTCCAAAAGGGGATCGAGCAAATTTGGCAAATAGCAAGGATCAGAACTATCTTAGACAGAGGAAATCAGAAGAAGCTGTATCACCTTTGAGTCGCACGAAGGAACTGCCAACGTTTAATAGCTCAAAACCTACATGCGAGATGACCAAACATAAGATCTGTGTTATTAAAGAAGAACCTGTTATTTGCAGATCAAATTTGGGTGCCCCTGAATGTCAATTAAATCAAGAGGATTCCTCATATGCTTTATCTCCACCTCTAGCTCAACATGTAGATGAGAAAAGTTCACATTGCGGACATAACAATATTATACTTCTTAGTGACGATGAAGATGATAAAATTAAGATGCCAGATTCAAATAGAAGGAAAGAAGTTCCTCATATGCTTGCAGGTTTTAGAAATAAAGCAAGCCTGCGTAATAATATAGAAAATAAAAGTTTGACCATCCCTGTGACAGACGACGCTGCGATGGGTGAAAAGGATGCTTTTACATTGCCCCGTGAAGATTTGGGTTCGAGTTCAACTCAGCTTTTGCATGTGAAACAGGAATGTCATGAACAGAAAGGACCAGTTTTAGCTTCCACCCCAGTAGATCTTTCTTTTCGTATAGGTCTTACTAGTGCAGAATCAGTTAGAAATATTCCAGCTTCTTCAAGAGCGGAGTCCAGCAATCATTGTTTGGAAAGATCGGAGGTTTGTCCTCCAAACCCACAACCTTCCAGCACTATTAAAGCTAAGAAGGAGGATAATCATGAGAAGTTTGGTGGATGTTCCACTTCTAATGTAGCAGACAATGCAAGAGCTATTAATGGTAACATATCTTGTGGTCCAAACAATAACCGTCAGAAAGGTCCTCGTATTGCAAAGGTTGTCCGGCGCATCAACTGCAATGTCGAGCCTTTGGAATTTGGAGTTGTGCTTTCTGGAAAGTCATGGTGCAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTCGATACATAAATATCTTAGATCCATGCAGTACATGTTACTATGTTTCAGAAATTCTTGATGCTGGACGTGGTTCGCCTCTATTTATGGTTTCCTTGGAAAATTGTCCAAATGAGGTTTTCATTCATACATCAGCAAAAAAATGCTGGGAAATGGTAAGAGAGAGAGTGAATCTAGAGATTGCAAAACAACATAAGCTGGGAAAAAAGGGTCTTCCTCCTTTACATCCTCCTGGCAGCCTTGATGGCTTTGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCACTAGATCGAAGTCGAGTTTGTAATGAATACTGGGACTCTCGGCCGTTCTCTCGGCCTCAAGGGCAGCTTTCACAAGCTTGCCAAACCAATGCAAATGGTGCAGGTGGAAATGATGAAGGGGTTCCTACGAATAAGTATGCACCTGTTGGAGTTGTTGAAGTACTAAAGAACCTATTTAAAAAGGCGAATGCAGAAGAATTGAACTCGTTGTACAGCATTCTTACTGACAATAAGCCAGCGGCTGAACAGATTCCAATAACGCAAATTCTCTATGAAGAAATTCACAAAACCCAACCACCCTAG 3792 0.4048 MTSLMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVEENEKHNDTNLTSSSTSASESQSNQIGNGVQFADTSKVSRSLRRRPWINHGQCENGLEEDSDCERHDQNFSSRSCLPKGVIRGCPDCSNCQQVIARWRPEDARRPNLEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPRSWKPTCPLKEKSIWEGSKFATRVQRIDKLQNRGSGSKKSRIQNNMKRKRRRCTRIGVNNGTGTGPNEEFCEVERFGFEPGPEFTLETFKRYADDFKVKYFRNENASHSSAHATILNGTSEPSVEKIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQVSVSHEQYIKSGWNLNNFARLPGSLLSYETSDISGVVVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKMWYGVPAIDACKLEEAMRKHLPELFEDQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGNIAIELYREQGRKTSISHDKLLLGAAREAVRAQWEINLLKKNTLGNLKWKDVCGKDGLLAKAFKTRVEMERVRREFLCGNSRALKMESSFDATSERECNICLFDLHLSAAGCQCSADRYACLDHAKQFCSCPWSSKFFLFRYDVSELNILVDALEGKLSAVYRWAKLDLGLALTSYVSVDKKTVLQELKSHSSNSSHSSRANVNKEEGLHPSNKLMDNSQLIDVPKGDRANLANSKDQNYLRQRKSEEAVSPLSRTKELPTFNSSKPTCEMTKHKICVIKEEPVICRSNLGAPECQLNQEDSSYALSPPLAQHVDEKSSHCGHNNIILLSDDEDDKIKMPDSNRRKEVPHMLAGFRNKASLRNNIENKSLTIPVTDDAAMGEKDAFTLPREDLGSSSTQLLHVKQECHEQKGPVLASTPVDLSFRIGLTSAESVRNIPASSRAESSNHCLERSEVCPPNPQPSSTIKAKKEDNHEKFGGCSTSNVADNARAINGNISCGPNNNRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINILDPCSTCYYVSEILDAGRGSPLFMVSLENCPNEVFIHTSAKKCWEMVRERVNLEIAKQHKLGKKGLPPLHPPGSLDGFEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPFSRPQGQLSQACQTNANGAGGNDEGVPTNKYAPVGVVEVLKNLFKKANAEELNSLYSILTDNKPAAEQIPITQILYEEIHKTQPP 1263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00400 1263 Pfam jmjN domain 150 183 IPR003349 -
Car04g00400 1263 MobiDBLite consensus disorder prediction 953 986 - -
Car04g00400 1263 Pfam C5HC2 zinc finger 612 662 IPR004198 -
Car04g00400 1263 MobiDBLite consensus disorder prediction 39 73 - -
Car04g00400 1263 ProSiteProfiles JmjN domain profile. 149 190 IPR003349 -
Car04g00400 1263 Pfam F/Y-rich N-terminus 1040 1082 IPR003888 GO:0005634
Car04g00400 1263 SMART JmjN_1 148 189 IPR003349 -
Car04g00400 1263 ProSiteProfiles JmjC domain profile. 359 522 IPR003347 -
Car04g00400 1263 Gene3D Cupin 134 506 - -
Car04g00400 1263 ProSiteProfiles FYR domain FYRC motif profile. 1087 1177 IPR003889 GO:0005634
Car04g00400 1263 PANTHER JUMONJI 14-RELATED 1010 1260 - -
Car04g00400 1263 PANTHER JUMONJI 14-RELATED 97 796 - -
Car04g00400 1263 Gene3D - 1034 1171 - -
Car04g00400 1263 Pfam JmjC domain, hydroxylase 389 505 IPR003347 -
Car04g00400 1263 MobiDBLite consensus disorder prediction 702 720 - -
Car04g00400 1263 SUPERFAMILY Clavaminate synthase-like 353 549 - -
Car04g00400 1263 MobiDBLite consensus disorder prediction 702 778 - -
Car04g00400 1263 MobiDBLite consensus disorder prediction 1180 1200 - -
Car04g00400 1263 MobiDBLite consensus disorder prediction 1180 1205 - -
Car04g00400 1263 Pfam F/Y rich C-terminus 1090 1173 IPR003889 GO:0005634
Car04g00400 1263 SMART cupin_9 359 522 IPR003347 -
Car04g00400 1263 SMART fyrn_3 1041 1085 IPR003888 GO:0005634
Car04g00400 1263 ProSiteProfiles FYR domain FYRN motif profile. 1027 1085 IPR003888 GO:0005634
Car04g00400 1263 MobiDBLite consensus disorder prediction 48 73 - -
Car04g00400 1263 SMART fyrc_3 1091 1185 IPR003889 GO:0005634
Car04g00400 1263 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1010 1260 - -
Car04g00400 1263 PANTHER LYSINE-SPECIFIC DEMETHYLASE 97 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00400 Car-Chr4 4114773 4124578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00400 5 1258 JUMONJI Transcription Factor Family AT1G08620 52.668 0.0 1229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Car04g00400 JmjC 1.9e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00400 - - gmx:100800271 2026.91