Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00356 ATGGAATCAAGAATTTTTCATGTTAACAAGAGGGAAGAAAAAAAGATAGTAGTGAAATATAAAGAGTGTCTCAAGAACCATGCAGCTGCAATTGGTGGCAATGCAACTGATGGATGTGGTGAGTTCATGCCTAGTGGAGAAACCGGCACACTTGAAGCTCTTATGTGTTGTGCTTGTAATTGCCACAGAAACTTCCACAGAAAAGAAATAGAGTCTAATTGTGATTGTAGTAGCCCTTCTAAACATTATGCTTTTTCATTGATTCCTGATAACGTTGCACCCATTTTGAATCATTTATCTCCCAACAAAAGTGGTTCAACTAGTCCTTCTGATCATTTTTATGAGAAGAACTATGAATATTGTGTTAATGAGGTGGAAAATCCAACTGAAAAGATGATAAAGAAGAGGTCTAGAACCAAGTTTACTCAAGAACAGAAGGAGAAAATGCAGGATTTTGCAGAGAAAGCAGGATGGAGGATACAGAAGCTAGAGGAATCTGTGGTGCAGAAGTTTTGCcaagaaattggaatcaagagaagagttcttaaagtgtggatgcacaataacaagaacacttttgctaagagaAATCTTTCTACTAACTAG 606 0.33 MESRIFHVNKREEKKIVVKYKECLKNHAAAIGGNATDGCGEFMPSGETGTLEALMCCACNCHRNFHRKEIESNCDCSSPSKHYAFSLIPDNVAPILNHLSPNKSGSTSPSDHFYEKNYEYCVNEVENPTEKMIKKRSRTKFTQEQKEKMQDFAEKAGWRIQKLEESVVQKFCQEIGIKRRVLKVWMHNNKNTFAKRNLSTN 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00356 201 Pfam ZF-HD protein dimerisation region 18 70 IPR006456 -
Car04g00356 201 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 134 191 IPR006455 -
Car04g00356 201 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Car04g00356 201 SUPERFAMILY Homeodomain-like 130 195 IPR009057 -
Car04g00356 201 Gene3D - 122 195 - -
Car04g00356 201 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 196 - -
Car04g00356 201 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 12 196 - -
Car04g00356 201 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00356 Car-Chr4 3667944 3668706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00356 14 197 ZF-HD Transcription Factor Family AT1G14440 52.913 9.54e-64 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Car04g00356 ZF-HD_dimer 3.9e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00356 - - gmx:100793926 287.73