Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00354 ATGGATGTTTCGAAGAAATATGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACATCCATGGTATGGTGAGTGGGGATATAATTTTGGCTCTGGTAGCTATTGTATCACACAGGAAGCATATAAGTCTTCTGTTGAAAGCCTATCCAATCTACCCCTGTCCATCTTTGTCTCCCAGGAACAAAAGCCCCATTCACGTGTGCACGATATCATCTTGTATTACCAGTCTTTGTCAGAGCATAAGCTTGTAAATATGAGGAACCTATTTAGTTTTTTGATGGGTTTGATGCACGATGCTCGCAAGACTTCCTCTAAGTCTGATGATGACACAACCTGCAAGAAGCGTCGTTTGAATGCTTCTGGATTATCAAGTTCTTGGGAGAAGAGTGACGTTCAACGTGTGGAGGAAGCCATGCTCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCGGTCGTGCTCTTAGGGGTGCTGTTTGCAAGTTGGCCTCTCCAGAGCTTCTTGATTATTGCCTTTCTGAACTGGGAGGAAAAATAGTCTATGGTGGGGTTGTTAATAGCAGATGCAATCCTCAGACTGGAGTTTATGAATTCAGAATTGATGCTACAAATGCTTCTTGCTATGGATTTATAGCCAACAGTAATTCTTCAGGCTCAAAGTGTCCGTCTAAAGAGAATATCCTGCAATGCTTGAGATATTTATACGAGTCTTTGCTACATCCTCGGATGATGCTAAACTATGTTGATGAAGAGACAAGAACCCTTGCAATGAGCTCGGCTCAAAAGCTTCTTGACTGCAAGCAATTAGTAAAAGATTATTCTCTTGAGATGTTGCCAGTATCAGATTTGTATAAAATACGCATCTCATGTCAAGTTGAACTAGTTGACCAACCTGAAGATTCTGCTGCTAGAACTCCACCAGAAATAATTGTGCTGCCCTCGAACGCCACACTGTCCGACCTTAAGATAGAAGCAACAAATGTGTTTCAAGATGTATATTTAATGTTTAGAAGATTCCAAGTTGACGAGCTACTTGGCTATAGCAGTGTAAACGATAACACCCAGGTCAAGCTCTTGTTAGGATCAAATGATGCGGTTTGTGTCCGAGGAAGATGCATTGGGAAGAATGGGTTGAGCAAGTTTCGAATGGAACGTGGACTTGAGAGGTGGACTGTCGAGTGCAGCTGTGGGACTAAGGATGACGATGGAGAGAGAATGATGGCTTGTGATATATGTGGAGTGTGGCGGCACACGAGGTGTTCTGGAATTCATGATACTGCTCCTGTTCCAGCACGTTTTGTTTGCTCGAGATGCCAAAATTGTGACTCAAGGCCTAAATCTAGTGTGCATTGTAAAGATGAGACTGTGACTAGTGTTAGCACTACTAGTACTAGTAGTAGTTGCTTTGGGAAGGGGAAGGGGAAGGGATTGGCAGTGCCTTCTGATGTTATTTAA 1464 0.4344 MDVSKKYGLEYRLLHAIMKGHPWYGEWGYNFGSGSYCITQEAYKSSVESLSNLPLSIFVSQEQKPHSRVHDIILYYQSLSEHKLVNMRNLFSFLMGLMHDARKTSSKSDDDTTCKKRRLNASGLSSSWEKSDVQRVEEAMLRVLRAVSGSNWVSGRALRGAVCKLASPELLDYCLSELGGKIVYGGVVNSRCNPQTGVYEFRIDATNASCYGFIANSNSSGSKCPSKENILQCLRYLYESLLHPRMMLNYVDEETRTLAMSSAQKLLDCKQLVKDYSLEMLPVSDLYKIRISCQVELVDQPEDSAARTPPEIIVLPSNATLSDLKIEATNVFQDVYLMFRRFQVDELLGYSSVNDNTQVKLLLGSNDAVCVRGRCIGKNGLSKFRMERGLERWTVECSCGTKDDDGERMMACDICGVWRHTRCSGIHDTAPVPARFVCSRCQNCDSRPKSSVHCKDETVTSVSTTSTSSSCFGKGKGKGLAVPSDVI 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00354 487 Pfam PHD-finger 397 444 IPR019787 -
Car04g00354 487 SMART PHD_3 396 442 IPR001965 -
Car04g00354 487 MobiDBLite consensus disorder prediction 463 487 - -
Car04g00354 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 447 IPR013083 -
Car04g00354 487 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 453 - -
Car04g00354 487 PANTHER OS01G0877500 PROTEIN 1 453 - -
Car04g00354 487 SUPERFAMILY FYVE/PHD zinc finger 385 443 IPR011011 -
Car04g00354 487 CDD PHD_MMD1_like 396 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00354 Car-Chr4 3652269 3658587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00354 2 441 PHD Transcription Factor Family AT5G22260 28.448 1.06e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car04g00354 PHD 2.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00354 - - mtr:MTR_1g076990 805.053