Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00348 ATGGGTTTTTCACTACTACACCTACTTCTTCTCTTTTTTCACATGCTCTTTTTCCTCTTAAACCCAAAATGTGTCTTTGGGATAAATGAAGAGTTAAAAACACTCATGGAAATCAAAGCAAGTTTGGATCCAAATAACCATTTTCTACACTCATGGACCATCAATGGTAACCCATGTGATGGATCTTTTGAAGGAGTAGCATGCAATAAAGAGGGTCAAGTTGCTAACATTTCTTTGCAGGGAAAAGGTCTTTCAGGGAAGCTTTCACCAACCATTGTTGCTCTCAAACACTTGACAGGTCTCTACTTGCATTATAACTCTTTGAATGGTGAGATACCGAGAGAAATTTCAAACTTGACTCAACTTGGTGAGTTGTATTTGAATGTTAATCACCTTTCTGGTGAAATCCCTCCTGAAATCGGAAGCATGGAGAGTTTGCAAGTTTTGCAGCTTTGTTATAATCAGTTAACAGGGAGCATACCTGCACAACTTGGTGCTTTGAAAAAGCTAAGTGTTGTTGCTTTGCAATCAAACCAATTAACTGGTGCTATCCCTGCTAGTCTTGGTGATTTGGGTATGCTTGTGAGGCTAGATTTGAGTTCTAATAATCTCTTTGGTTCCATTCCAACTGGTCTAGCTAGTGTTTCTTCACTCAAAGTTTTGGATGTTCACAACAATTCACTTTCTGGAAATGTACCTCCTGCTCTTAAGAGACTAAATGATGGATTTTTGTATAAGCACAATCTTGGGTTATGTGGAGTTGGGTTTCCATTCTTGAAAACATGCAATACAAGCAAAGATGGAGCACCAACAAGAAATATCCCAGAAACGGCAAATGTGAAGTTACCTTGCAATGAAACTCAATGCTTTCATTCATCGAAGTCCAATCAAGCCACACCAATTACTCTTGGCGTATCTGTGGTTATAATTGCAGTGTTGGCAATTGTTATCTTAACGTTCACGTTATATATGCGTCGAAGAAAGCAAAAGCTTGGAAATTCTACTCATATCTTGGATAGTCGTCCAAGCACCGATGAAGCCAAAGTTATATACAGAAAAAGTGGATCTCCTTTGGCTAGCCTTGAGTACACTACTGGATGGGATCCTTTGGCTTATTATAGGAATTTCAATGTGGAAAACCAAGAGGCCCAAGACAGGTTCCATAATTTCAGGTTTAACTTGGAAGAAGTGGAGTCGGCTACTCAACATTTCTCGGATTCGAATTTGTTAGGGAAGAGTAACTTTTGTGCAACATATAAAGGCGTTTTAAGAGACGGTTCAGTCGTTGCTGTGAAGAGCATTAGCAAAACTAGTTGCAAGTCTGATGAAGTTGAGTTTTTGAAGGGTTTGAACATTTTGGCATCAATGAGGAATAATAATTTAGTAAGGTTGAGAGGATTCTGTTGTTCGAGGGAGCGAGGCGAATGCTTTCTGATCTATGATTTTGTTCCTAACGGAAATTTGTCGCGCTTCCTTGATAAGACGGAAAATGATGGAGAAGTCCTTGAATGGTCAACTAGAGTTTCTATTGTCAAAGGAATTGCTAAAGGCATGGCATATTTGCATTCATACAAACCAAACAAACCAGTAATCGTTCACCAAAACATCTCAGCTGAAAAGATTCTAATTGATCAGAGGTACAATCCATTGCTGGATGATTCTGGTCTGTACAAGCTTCTTACAAATGATATTGTCTTCTCTGCACTTAAGGGTAGTGCAGCAAAGGGTTACTTAGCTCCTGAATACATCACTACCGGCCGGTTCGCCGAGGCAAGTGATGTTTACGCATTTGGTGTGGTGCTTTTCCAAATCCTCTCAGGGAAGAAGGTGATAACTAACTCAATAAGGCATGCTGCAGAATCCTTAAAATTCAAAGAGTTTATTGATCAAAATGTTGATGGTAGATTCTTTGAATATGAGGCAGCTAAACTAGCAAAGATAGCTTTGCTTTGCACTCATGAGTCTCCTTTTGAAAGGCCATCCATGGAAGCAATTGTTAAAGAATTGGGAAATTGTAGTAGCTGTCTCTAA 2031 0.3924 MGFSLLHLLLLFFHMLFFLLNPKCVFGINEELKTLMEIKASLDPNNHFLHSWTINGNPCDGSFEGVACNKEGQVANISLQGKGLSGKLSPTIVALKHLTGLYLHYNSLNGEIPREISNLTQLGELYLNVNHLSGEIPPEIGSMESLQVLQLCYNQLTGSIPAQLGALKKLSVVALQSNQLTGAIPASLGDLGMLVRLDLSSNNLFGSIPTGLASVSSLKVLDVHNNSLSGNVPPALKRLNDGFLYKHNLGLCGVGFPFLKTCNTSKDGAPTRNIPETANVKLPCNETQCFHSSKSNQATPITLGVSVVIIAVLAIVILTFTLYMRRRKQKLGNSTHILDSRPSTDEAKVIYRKSGSPLASLEYTTGWDPLAYYRNFNVENQEAQDRFHNFRFNLEEVESATQHFSDSNLLGKSNFCATYKGVLRDGSVVAVKSISKTSCKSDEVEFLKGLNILASMRNNNLVRLRGFCCSRERGECFLIYDFVPNGNLSRFLDKTENDGEVLEWSTRVSIVKGIAKGMAYLHSYKPNKPVIVHQNISAEKILIDQRYNPLLDDSGLYKLLTNDIVFSALKGSAAKGYLAPEYITTGRFAEASDVYAFGVVLFQILSGKKVITNSIRHAAESLKFKEFIDQNVDGRFFEYEAAKLAKIALLCTHESPFERPSMEAIVKELGNCSSCL 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00348 676 Pfam Leucine rich repeat 145 204 IPR001611 GO:0005515
Car04g00348 676 Gene3D Ribonuclease Inhibitor 144 255 IPR032675 -
Car04g00348 676 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 674 - -
Car04g00348 676 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Car04g00348 676 Gene3D Phosphorylase Kinase; domain 1 371 482 - -
Car04g00348 676 SUPERFAMILY Protein kinase-like (PK-like) 387 669 IPR011009 -
Car04g00348 676 SMART LRR_typ_2 191 214 IPR003591 -
Car04g00348 676 SMART LRR_typ_2 215 239 IPR003591 -
Car04g00348 676 SMART LRR_typ_2 143 167 IPR003591 -
Car04g00348 676 SMART LRR_typ_2 95 119 IPR003591 -
Car04g00348 676 Pfam Protein tyrosine and serine/threonine kinase 408 669 IPR001245 GO:0004672|GO:0006468
Car04g00348 676 Gene3D Transferase(Phosphotransferase) domain 1 484 675 - -
Car04g00348 676 Gene3D Ribonuclease Inhibitor 30 143 IPR032675 -
Car04g00348 676 ProSiteProfiles Protein kinase domain profile. 404 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00348 676 CDD STKc_IRAK 410 669 - -
Car04g00348 676 SUPERFAMILY L domain-like 31 238 - -
Car04g00348 676 PANTHER PROTEIN NSP-INTERACTING KINASE 2-LIKE 8 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00348 Car-Chr4 3619949 3623147 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00348 11 517 Miscellaneous Gene Families AT4G22730 53.700 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Car04g00348 PK_Tyr_Ser-Thr 2.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00348 - - gmx:100816801 1007.28