Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00344 ATGGAGGAAAGAGAGAATTTTGGTGGTGGGAATGCAGTGGTGGGTGGTGAGGTCCCAGTGAGCTTCCACGTGGCACCAAGGATTGAAAACAACTTGGATTTTTCCATGGCAACGGTTCCGGCATCGTCGCCGGCGATGAAGAAGAAGAGGGGTAGACCAAGGAAGTATGGACCGGATGGCAAGGCTGTTCCGGGGGCTGTGACGGCGCTTTCACCGATGCCGATTTCATCGTCGATTCCGTTGACCGGTGAATTCTCTGGTTGGAAAAGGGGTAGAGGGAGACCTGTTGAATCTATCAAGAAGTCATCATTGTTTAAGTATGATTTTGAAAGTCCAATAGGACCAGGTATAGGTGAAGGAATTGGTTACTCTGTAGGTGCAAATTTCACGGCTTATGTGCTAACAGTGAATTCTGGCGAGGATGTTACTATGAAAATCATGTCATCCCAACAAGGATCGCGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGTCAACCGTCTTCTTCAGGGGGTACTTTAACATATGAGGGACGATTTGAGATTCTTTCCTTGTCTGGGTCCTTTATGCCAACCGATAATGGAATTACAAGAAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTATTGGGTGGTGGACTTGCTGGTCTGCTTATAGCCTCTGGTCCTGTGCAGGTTGTTGTGGGGAGTTTTCTTCCTGGTCACCATCTGGAACACAAGAACAAGAAGCAAAGGGTGGAGCATAATATATCAACTACAATCACTCATAACCCTACTACAATCACTCATAACCCTACTATAATCACTCATAACCCTACTACACATGTTAATCATCATATGCCAAATGAGGAAATAAAATTAAGTTTTGGTGGAGTGAAGCCTATTATGACACCTGTTGCCTTTCATGGAGAGAATATCGTTTCTTTCAACAACAACAATGTTCAAGACTCTAGAAACTCATCTGCTGATGACAGAGATCCTTTACCTGAAAAGGAATCTAACCAAAGCCAATCAACTGCTTGA 1059 0.4466 MEERENFGGGNAVVGGEVPVSFHVAPRIENNLDFSMATVPASSPAMKKKRGRPRKYGPDGKAVPGAVTALSPMPISSSIPLTGEFSGWKRGRGRPVESIKKSSLFKYDFESPIGPGIGEGIGYSVGANFTAYVLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQPSSSGGTLTYEGRFEILSLSGSFMPTDNGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPGHHLEHKNKKQRVEHNISTTITHNPTTITHNPTIITHNPTTHVNHHMPNEEIKLSFGGVKPIMTPVAFHGENIVSFNNNNVQDSRNSSADDRDPLPEKESNQSQSTA 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00344 352 CDD DUF296 132 243 IPR005175 -
Car04g00344 352 Gene3D - 130 265 - -
Car04g00344 352 MobiDBLite consensus disorder prediction 42 63 - -
Car04g00344 352 MobiDBLite consensus disorder prediction 322 352 - -
Car04g00344 352 SMART AT_hook_2 47 59 IPR017956 GO:0003677
Car04g00344 352 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Car04g00344 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 9 343 - -
Car04g00344 352 Pfam Plants and Prokaryotes Conserved (PCC) domain 131 243 IPR005175 -
Car04g00344 352 ProSiteProfiles PPC domain profile profile. 126 268 IPR005175 -
Car04g00344 352 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 343 IPR039605 GO:0003680
Car04g00344 352 SUPERFAMILY AF0104/ALDC/Ptd012-like 128 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00344 Car-Chr4 3553305 3559294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00344 32 248 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 64.706 5.46e-86 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00344 - - gmx:100789179 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car08g01420 08 22783373 22787561 Car04g00344 04 3553305 3559294 PCT