Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00329 ATGGTAGGTTTGGAACTCATACCTATAGGTACAATATTAACTGTGGTAACAAACCAGGTTTTGAGAACAGCTCATGCAGCATCTGATGTTCTTATTGGTAAAGAAAGTTTCAAGGCCCTTTCAAAACATCTATTTGATATCGAGCCGGTCCTAAAGGAATTACAGCTTCAAGAATTGAATGATTCACTACCTACAAGAGTTGCTCTAGAGTCCCTTGAAAAAGATGTTAAAAAAGCAAACAATTTGGTTGAAAAGTACAAGAATCGCGGACGTTTCTACTTATTGGTTAAGTGTCGGTCCATAGTCGAGGAGGTTAAACAAGTCACGAGGGATATCGGAAAGTCTCTGGCTACACTTCCTATTGCAAATACTGGATTGCAATCAAGAATCTCTGATCAGGTTCATAGACTACAGGATGAGATGCAAAGGGTTGAGTTCGAGGCTTCGCAATCTCAGCTTGAAATTGTTGACAAGTTGAACCAAGGACTAAGAGAACAGAAACAAGATCAGGCTTTTGCGAACGACATACTTGAGGAGATCGCGAGGGCGGTTGGAGTGCCAGTGGAACCATCTGAGATAGGAAAAGAGTTGGCCAGCATTAAGAAGGAAAAAGAAGAAGCTGCAATTCGGAAAGAAAAGGCCGAATTTGTTTTCTTGGAGCAGATCATTAAGTTACTCTCTAGAGCTGATGCAGCAAGGGATTATGAAGAAGTTAAGAATCAATACTTTGAAAGGCTTCAAGTGATAGAGAGATATGGTTCAAGGGAGAAATATATCATGCCACTTAATTCTTTCCTTTGTTGTATAACTGGAGGTGTGATGGTTGATCCTGTTAGCCTTTGCACAGGTACTACATGTGAGAGATCTGCTATTGAAGCTTGGTTTTACGATGGAAATCAAACCGACCCGGAAACAAAAGAGGTTCTTGAAGATACTAGCTTAAGGTCTAATATTCCACTAAGACAGTCCATTGAAGAGTGGAGAGAACTTAATTACTGTCTCTTGATAAGGTCTATTAGGGAAAATTTGTTATTAAATTGTGACCTGCAAGAATCCATGAGCCAAATGCAGGCTCTAATAAAGGAGAATTCTATTAACAAGGATTGGATCTCTATTGGAGAGCTTACTGATATTGTTATCTCTAAACTTGGGAAGTCTAATGACAGAGAAGTGAAGATGAAGATTTTGATCACTTTGAAAGATGCTGTTGAGGGACATGCAAGAAACAAGgagaaagtggccgagtctcaAGGATGGGATCATATTATTTCGTGCTTAAAGAGCGACTCCAACATTTCAAAGGCAGCAATTGATTTGTTACACGAGTTACTTCAAGACCGATCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGACAACCATACTGCAGTTCCTTACCTTGTAACCCTTGCAAAGGACCCAGAAAACGATTCAGCTGAGGTTGCATGTAAGATTTTGATGGAGCTTTTTGAAATAAATGAAAGCAGCATTATCACTGCTGCTAATTGTGGCTGGTATAAGCCACTAGCTGATCGCATGATTCGAGGACCGGATTCGAGAATATCAATGGCAAAAGCTATAGTTAATTTGGATTTGGATGATTCAAATTTGATGCTCCTTGGCAAGGAAGGAGTTATAACTCCTTTAATAGATATGCTGTCTGGAAGTATCGAATCAAAAGATCTGTCATTGTCTGCGCTGGTTAAACTAGCCGGATCTCATGCTAACAAAGGAATTATTGCTTCCTCCGGCGGTGTTCCTCTTATTCTAGATTTAATGTTCTCTCCTCGGACGAGATCATTCATTGCCATGAAATGCTCGGAAATTCTTGAGAAGCTTTCTTCTTCTGATGATGGAATTGATTTCTTTGTTGACGGAGAAGGGCAACAGCTTGAGTTAGATTCCATCATCACAAAATTATTAGTTTTGCAGAAAACTTCCAACTCAGGTCACAGCCTTCGTAAGCCTGCACTACGCGCTCTTCTCGGTATTTGCAAGTTTGAGACTAGTTTGGTGAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATTCTGACTCAGAAATTCGAGAGACTGCGATAAACCTGCTATTTCTTTTCTCTCAGCACGAACCGGAAGGAGTAGTTGAATACCTCTTCAAGCCTAGAAGGTTGGAAGCTTTGATTGGATTTTTAGAGAATGATGACAATGATAATGTACAAATGGCTGCAGCTGGTTTACTAGCTAACCTACCGAAATCGGAACGAAAACTAACTACAATGTTGATTGAAATGGGAGGACTTGATGCAATCATAAGCATTTTAAAAACCGGAAAAATGGAAGCAAAAGAAAATGCTCTCAGCGCTCTCTTCAGGTTCACAGATCCTACAAACATCGAGTCACAACGTGATTTGGTTAACCGAGGAATATATCCATTGCTTATTGATTTTCTCAATACCGGTTCAGTCACAGCAAAGGCAATAGCTGCAGCTTTCATTGGCGATCTTTCTATGAGCACTCCAAAGCTAACAGTTGCATCCAAACCAAAGGGTTGCTGGTTTTTCAAATCATCGCGCGTTCCATTATGCGCAGCACACGACAGTGTGTGCAGTGTCACCAGCACATTTTGTCTCTTGGAAGCAAATGCTTTACCTGGTTTAATAAAGCTGTTACATGGTGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCTACATTGGTTTTGGAGGAATTTCCACAAAGGGGGGCTCGTTTGTTGCATGAGTCAAATGCAATGAGACCCTTATTGGAGATTTTGAATTGGGGTAGTGAGTCCCTTAAGGCAGAAGCTTTAGGACTTATGGAGAAGGTGTTTGTGTCAAAGGAAATGGTGGAATACTATGGAGTGACAGCTAGATCACATTTAGTTTGTCTTACTGGCATGAATATATATGGAGATGGTCATCTTAGAAGGAAAGCTGCTAAGGTATTATCATTGATTGAACGTTATTCAAAGTCTTCATCATCTTCTATCTCTGGAGTTTTTGAGTGA 3042 0.3974 MVGLELIPIGTILTVVTNQVLRTAHAASDVLIGKESFKALSKHLFDIEPVLKELQLQELNDSLPTRVALESLEKDVKKANNLVEKYKNRGRFYLLVKCRSIVEEVKQVTRDIGKSLATLPIANTGLQSRISDQVHRLQDEMQRVEFEASQSQLEIVDKLNQGLREQKQDQAFANDILEEIARAVGVPVEPSEIGKELASIKKEKEEAAIRKEKAEFVFLEQIIKLLSRADAARDYEEVKNQYFERLQVIERYGSREKYIMPLNSFLCCITGGVMVDPVSLCTGTTCERSAIEAWFYDGNQTDPETKEVLEDTSLRSNIPLRQSIEEWRELNYCLLIRSIRENLLLNCDLQESMSQMQALIKENSINKDWISIGELTDIVISKLGKSNDREVKMKILITLKDAVEGHARNKEKVAESQGWDHIISCLKSDSNISKAAIDLLHELLQDRSGWNQCFCKKLSDNHTAVPYLVTLAKDPENDSAEVACKILMELFEINESSIITAANCGWYKPLADRMIRGPDSRISMAKAIVNLDLDDSNLMLLGKEGVITPLIDMLSGSIESKDLSLSALVKLAGSHANKGIIASSGGVPLILDLMFSPRTRSFIAMKCSEILEKLSSSDDGIDFFVDGEGQQLELDSIITKLLVLQKTSNSGHSLRKPALRALLGICKFETSLVKKAILAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERKLTTMLIEMGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVNRGIYPLLIDFLNTGSVTAKAIAAAFIGDLSMSTPKLTVASKPKGCWFFKSSRVPLCAAHDSVCSVTSTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEEFPQRGARLLHESNAMRPLLEILNWGSESLKAEALGLMEKVFVSKEMVEYYGVTARSHLVCLTGMNIYGDGHLRRKAAKVLSLIERYSKSSSSSISGVFE 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00329 1013 Coils Coil 69 89 - -
Car04g00329 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Car04g00329 1013 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Car04g00329 1013 SMART arm_5 574 612 IPR000225 GO:0005515
Car04g00329 1013 SMART arm_5 406 445 IPR000225 GO:0005515
Car04g00329 1013 SMART arm_5 872 912 IPR000225 GO:0005515
Car04g00329 1013 SMART arm_5 755 796 IPR000225 GO:0005515
Car04g00329 1013 SMART arm_5 534 573 IPR000225 GO:0005515
Car04g00329 1013 SMART arm_5 670 710 IPR000225 GO:0005515
Car04g00329 1013 SMART arm_5 799 839 IPR000225 GO:0005515
Car04g00329 1013 SMART arm_5 712 754 IPR000225 GO:0005515
Car04g00329 1013 SMART arm_5 916 956 IPR000225 GO:0005515
Car04g00329 1013 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Car04g00329 1013 Coils Coil 134 154 - -
Car04g00329 1013 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Car04g00329 1013 Coils Coil 195 215 - -
Car04g00329 1013 Gene3D - 863 997 IPR011989 -
Car04g00329 1013 SUPERFAMILY ARM repeat 648 1000 IPR016024 -
Car04g00329 1013 Gene3D - 349 498 IPR011989 -
Car04g00329 1013 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1010 - -
Car04g00329 1013 Pfam MCAfunc domain 24 150 IPR045766 -
Car04g00329 1013 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 333 IPR013083 -
Car04g00329 1013 Gene3D - 8 123 IPR036537 GO:0007166
Car04g00329 1013 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 724 767 IPR000225 GO:0005515
Car04g00329 1013 SUPERFAMILY RING/U-box 250 330 - -
Car04g00329 1013 Gene3D - 516 847 IPR011989 -
Car04g00329 1013 SUPERFAMILY ARM repeat 363 720 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00329 Car-Chr4 3394917 3399617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00329 264 1012 U-box Gene Family AT1G76390 27.329 7.02e-41 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00329 - - gmx:100783638 1598.18