Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00323 ATGGAAAACAGTGTGGCATATCAGACTGATCTTAACTTGAAGGCTACTGAGCTTAGATTGGGACTTCCAGGGACAGAGGAAACACTTCTTTCTGTTTCTGTTAAAAACAACAAAAGACCATTGATTGAAACTTCCAAAGAGTGTGATTCAAAAAGTTCTAACACTGATGCAGCACCTCCTTCAAAGGCTAAAATAGTGGGGTGGCCACCAATAAGATCTTATAGGAAGAACAGCTTGCAAGAGGCTGAGGCTTCTGGGATCTATGTGAAAGTGAGCTTGGATGGAGCTCCTTACCTTAGAAAGATTGATTTGAGGGTCTATGGAGGTTACTCACAACTCCTCAAAGCTTTGGAAAATATGTTCAAGTTAACCATAGGTGACTACTCTGAAAAAGAAGGTTATAAAGGATCTGATTATGAACCTACTTATGAAGACAAGGATGGTGATTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGACTAAGAATCATGAAAGGATCAGAAGCTAGAGGTATAGGATGTGGTGTTTAG 552 0.4004 MENSVAYQTDLNLKATELRLGLPGTEETLLSVSVKNNKRPLIETSKECDSKSSNTDAAPPSKAKIVGWPPIRSYRKNSLQEAEASGIYVKVSLDGAPYLRKIDLRVYGGYSQLLKALENMFKLTIGDYSEKEGYKGSDYEPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGIGCGV 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00323 183 Pfam AUX/IAA family 45 179 IPR033389 -
Car04g00323 183 PANTHER AUXIN-INDUCED PROTEIN 10 179 - -
Car04g00323 183 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 179 IPR003311 GO:0005634|GO:0006355
Car04g00323 183 SUPERFAMILY CAD & PB1 domains 77 172 - -
Car04g00323 183 Gene3D - 80 183 - -
Car04g00323 183 ProSiteProfiles PB1 domain profile. 86 173 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00323 Car-Chr4 3332889 3334396 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00323 89 182 B3 DNA Binding Superfamily AT4G23980 31.915 2.60e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car04g00323 AUX_IAA 1.7e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00323 K14484 - gmx:100527777 302.367
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00152 04 1528480 1530223 Car04g00323 04 3332889 3334396 ECH
Car04g00323 04 3332889 3334396 Car04g00323 04 3332889 3334396 ECH