Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00322 ATGGCTACTTTGATTGGAAAGGAGAGTGGTTTGAACTTGAAGGAGACAGAGCTTTGCCTTGGTTTGCCCGGTGGTGGTGGTTCTGGTTCTGAGGTGGAAACTCAAAGAGCTGCTGGAAAGAGAGGTTTTTCTGAGACAGTTGATCTGAAGCTGAATCTTCAATCCAACAAGGAAGATCTGAATGACAATTCTAAGAATGTTTCCAAGGACAAGACTCTCCTTAAGGACCCTGCCAAGCCACCTGCTAAGGCACAAGTAGTTGGTTGGCCACCAGTGAGGTCATACAGGAAGAACATGATGGCACAAAAGGTTAACAATAGTGATCAGGATGGCAATGAGAAGACAACAAGTAGCACTACTGCTGGTACATTTGTCAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTTGACTTGACAATGTATAATACCTACAAAGATTTATCCGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAAGTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGCCTGCGAATAATGAAAGGATCGGAAGCAATTGGCCTTGCACCAAGAGCCATGGAGAAATGCAAAAACCGAAGCTGA 723 0.4523 MATLIGKESGLNLKETELCLGLPGGGGSGSEVETQRAAGKRGFSETVDLKLNLQSNKEDLNDNSKNVSKDKTLLKDPAKPPAKAQVVGWPPVRSYRKNMMAQKVNNSDQDGNEKTTSSTTAGTFVKVSMDGAPYLRKVDLTMYNTYKDLSDALAKMFSSFTTGKYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00322 240 ProSiteProfiles PB1 domain profile. 122 222 IPR000270 GO:0005515
Car04g00322 240 MobiDBLite consensus disorder prediction 62 77 - -
Car04g00322 240 MobiDBLite consensus disorder prediction 22 44 - -
Car04g00322 240 Gene3D - 116 234 - -
Car04g00322 240 Pfam AUX/IAA family 35 231 IPR033389 -
Car04g00322 240 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 233 IPR003311 GO:0005634|GO:0006355
Car04g00322 240 MobiDBLite consensus disorder prediction 56 85 - -
Car04g00322 240 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 7 233 - -
Car04g00322 240 Coils Coil 50 70 - -
Car04g00322 240 SUPERFAMILY CAD & PB1 domains 117 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00322 Car-Chr4 3309115 3312092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00322 107 230 B3 DNA Binding Superfamily AT4G23980 31.452 2.46e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car04g00322 AUX_IAA 1.1e-83 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00322 04 3309115 3312092 Car04g00322 04 3309115 3312092 ECH