Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00320 ATGGTAAAGCAAAAGGTGAATCATGCGAAGCTCTCTGAATTGTTCACGTGTCGTTTGTGTAATAAATATCTCAGAGACGCCACCACAATATGTGAATGCTTGCATTCTTTTTGCAGGGAATGTATAGAAAAGAAGCTAACAGATGAGAAATTAAATCATTGTCCAGTATGCAATGTAGACTTGGGTTGTTCTCCATTAGATAAACTAAGGACAGATAATAATCTGCAAGGTATGAGGGACAAATTTTTCTCCAATAAAGGAAAAAATGTTAAGAAAACTGTGTCAACCAAAAAGAAGAAGAAGTCTCAATTCTCAACAAAGACCAATGGAAAAAAGGCCAAAAGAGCTTCAAAAAAAGTTAAGAATGATGCAACTGAAAAGGAGGCACAAGAAGAGACAAAGCAGATGCAAGAATTCTCTATTACTCCACAAGAACCAAAAGTTTCTGCTTCTGAAATGGTAGCTGATGTTAAGAAAGAGGAAAGAAAACACTGTGGGATAGAAATTTTGGATGAAGTTTCGACAATTCTATCTGCTAGAAGAGCAAAAGCTGTAGCTAGAAAAAAGTTCATTAGAACTGACTTAATTCCTACAGTTGATGAAAAGAAAGATGATAAGCTCCCTCAGTTTGAAACATTCAGTGAGACTCCAAAAATCAGATTTAAGCAGATGTCTTCAAAACCAGAATCAAGTCAGAGAATAGTGCTCAAGAATGTTTCAGAGGACAATGCCGAGTTAAGGAAAGGAAAAGCTGTTATGTATGATGAGCCATTCAATTACCTTGTGGAAACTAAAAGCAAAAACAAGTCTCCTAATAACTCTACTATGCAAGAAAATGGTGTCATTCCAATGCTTTTGGACTCTAGTGACAATGATTCTCATCATGTGCCTAAGGTTCAAGTTAAGAAACATTGGAACCACCAAATAGAACCACTGTGGGATCTAAATGAATCTGTTTCTCCAAATAAAGATCCCTTGAAGTTTAAGCTTAAGTTGCTGGACAGAAACCAAGAAAAAAGACTCAAATTTATTGAAGACTTGAATCTTCCAGCACAACCTGAGAGTGAAAACCACAAAGAAACTGGTCCTATTTGGTTCTCCTTGGTTGCTTCTAAAGAGAGGTATGATTACTTTTCAAAGCTTGTTAATATTCATCTAATGAAAGTTTTtatttattttaaatatttGAATGGAAATTTATCTGTTTCCTATATCAAAAAGTATCTTGTGATGAAGCTTGGTCTTTTTAGTGAAGCTGAGGTGGAGATCTTATTAGAAGGTAAACCGGTTTTATCATCAATGCAGCTGCAAAACTTAGTGGAGTTTTGGTTGGAAACAATACCAAAGAATGGGAAGATTCATACATCTGTTGGAAGCTCAGCTAAGGATTATATTATGGTCCTTTCGTATGGTCGTAAAGCTTGA 1425 0.3544 MVKQKVNHAKLSELFTCRLCNKYLRDATTICECLHSFCRECIEKKLTDEKLNHCPVCNVDLGCSPLDKLRTDNNLQGMRDKFFSNKGKNVKKTVSTKKKKKSQFSTKTNGKKAKRASKKVKNDATEKEAQEETKQMQEFSITPQEPKVSASEMVADVKKEERKHCGIEILDEVSTILSARRAKAVARKKFIRTDLIPTVDEKKDDKLPQFETFSETPKIRFKQMSSKPESSQRIVLKNVSEDNAELRKGKAVMYDEPFNYLVETKSKNKSPNNSTMQENGVIPMLLDSSDNDSHHVPKVQVKKHWNHQIEPLWDLNESVSPNKDPLKFKLKLLDRNQEKRLKFIEDLNLPAQPESENHKETGPIWFSLVASKERYDYFSKLVNIHLMKVFIYFKYLNGNLSVSYIKKYLVMKLGLFSEAEVEILLEGKPVLSSMQLQNLVEFWLETIPKNGKIHTSVGSSAKDYIMVLSYGRKA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00320 474 CDD RING-HC_PCGF 15 58 - -
Car04g00320 474 SUPERFAMILY RING/U-box 11 70 - -
Car04g00320 474 Pfam Zinc finger, C3HC4 type (RING finger) 17 57 - -
Car04g00320 474 Coils Coil 122 142 - -
Car04g00320 474 ProSitePatterns Zinc finger RING-type signature. 33 42 IPR017907 -
Car04g00320 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 104 IPR013083 -
Car04g00320 474 ProSiteProfiles Zinc finger RING-type profile. 17 58 IPR001841 -
Car04g00320 474 MobiDBLite consensus disorder prediction 86 148 - -
Car04g00320 474 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 4 150 IPR044807 GO:0004842
Car04g00320 474 MobiDBLite consensus disorder prediction 91 118 - -
Car04g00320 474 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 4 150 - -
Car04g00320 474 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 161 473 IPR044807 GO:0004842
Car04g00320 474 MobiDBLite consensus disorder prediction 119 134 - -
Car04g00320 474 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIPH-RELATED 161 473 - -
Car04g00320 474 SMART ring_2 17 57 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00320 Car-Chr4 3276774 3281163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00320 5 119 C3H Transcription Factor Family AT2G30580 41.353 1.44e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00320 K16277 - pop:7474161 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03057 03 75523966 75533045 Car04g00320 04 3276774 3281163 ECH
Car04g00147 04 1464061 1468376 Car04g00320 04 3276774 3281163 ECH
Car04g00320 04 3276774 3281163 Car04g00320 04 3276774 3281163 ECH