Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00313 ATGGTAAGAGCTCCTTGTTGTGAAAAGATGGGATTGAAAAGAGGTCCTTGGTCTCTTGACGAAGATCAAATCCTTACTTCTTACATCCAAAAACACGGCCATGGCAACTGGCGCGCCCTCCCTAAACTTGCAGGCTTGTTAAGGTGTGGAAAGAGCTGTAGACTTAGATGGATTAACTATTTGAAACCTGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAACTATCATTAAGCTTCACGAAAAGTTAGGGAACAGGTGGTCAGCAATTGCGGCAAAATTACCAGGAAGAACGGACAATGAAATAAAAAATGTGTGGCACACACATTTGAAGAAGAAATTAACAAAAACCAATTCAGAAACCAAAAGGGTCACAAAAAAACCAAAAATCAAACGTTCTGATTCAAATTCAAGCACAATAACTCAATCAGAACAAGCAAGTCTTAGTTTTCATGAAATAGAGAcatcatcatcagcatcagcatctgcatctgcatGCACTAGTTCAAGTGATTTTTCATCTGTCACAGTTGGTGAAAGCAAAAATACAAAAAGTGAAGACATAGAATCAATGGAAACCATATCACCAATAATTGATGAGAGTTTTTGGTCAGAAGCAGCAGCATTGGATGAAACGTCCACTGATATGTCATCAAAAAATTCTTTGACAGTTTCAAATGAGATATTGCCATTGCAATACTCTTCTAACTATGATGAAATTTTCCAACAGAGTCATGATTATAATTCTAACTTTGATGATGGCATGGATTTTTGGTATGACATATTCATCAGGACTGGGGATCAAATAGAATTGCCAGAGTTCTGA 831 0.3526 MVRAPCCEKMGLKRGPWSLDEDQILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLKPDIKRGNFTNEEEETIIKLHEKLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLTKTNSETKRVTKKPKIKRSDSNSSTITQSEQASLSFHEIETSSSASASASACTSSSDFSSVTVGESKNTKSEDIESMETISPIIDESFWSEAAALDETSTDMSSKNSLTVSNEILPLQYSSNYDEIFQQSHDYNSNFDDGMDFWYDIFIRTGDQIELPEF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00313 276 Gene3D - 14 66 - -
Car04g00313 276 CDD SANT 69 112 IPR001005 -
Car04g00313 276 Gene3D - 69 148 - -
Car04g00313 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Car04g00313 276 MobiDBLite consensus disorder prediction 118 150 - -
Car04g00313 276 CDD SANT 16 61 IPR001005 -
Car04g00313 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Car04g00313 276 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Car04g00313 276 MobiDBLite consensus disorder prediction 136 150 - -
Car04g00313 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Car04g00313 276 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Car04g00313 276 PANTHER MYB15 1 268 - -
Car04g00313 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 268 - -
Car04g00313 276 SMART sant 66 114 IPR001005 -
Car04g00313 276 SMART sant 13 63 IPR001005 -
Car04g00313 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Car04g00313 276 MobiDBLite consensus disorder prediction 165 183 - -
Car04g00313 276 MobiDBLite consensus disorder prediction 165 193 - -
Car04g00313 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00313 Car-Chr4 3234372 3237055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00313 1 276 MYB Transcription Factor Family AT2G31180 48.582 8.14e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g00313 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00313 K09422 - gmx:100807569 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00313 04 3234372 3237055 Car04g00313 04 3234372 3237055 ECH