Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00310 ATGGGGCAAGGGCAATCCAAAAGCGAGTTGCTCTATCAGCAAGTCAGTTATGGGAACTCCGATGGAATCAAAACCCTTCACAGAGAAGGTGCAGGCCTTGAGTGGGTGGACAGAGAAGGAAAGACACCCTTGATTGTTGCTTGTATGAATCCTGAGCTTTACAATGTTGCTAAAACTTTGATAGAACTTGGTGCCAATATCAATGCATACCGCCCTGGACGTCATGCTGGGACTCCATTGCATCATGCAGCTAAAAGGGGCCTTGAAAGTGTTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTGGTTTTGAATGATGATTGTCACACTGCTCTTGAGGTTGCAAGGGCTAAAGGAAACAGCAATGTTGTTCGTGCAATTGAGAGTCATATATGCTTGTTCTCCGGTTGGTTGCGGGAGTTTCATGGACCTGGGTTTTTAGAAGTAGTGGCTCCTCAGTTGGTTTCGAGAAAAGTTTGGGTGGTAGTTTTACCGGTAGGCACCCGTATTCTCACCAGTCCTTACAAGTTGGAGCTTGCCGTCTATTCTACTTTGCAGGATGCACGACCACGCACAGTTGTTGCTTTGTGGAAGGCCAATTTAGAAGAACCAAAGCTTCGCCAGTCTGATCCGTCAGTAACAATTAGTGATAAGACTACCAAAACACGCCTTAGATTTGGGCCTGCAAGTGAGAATGATAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGTAAATCCAACATTTTTGCATAATAATGTGGCTACAATTCCACCAACAGCACCACCTGCTGCCGAAGACCCAGAGTTGGCTATGGCTATCCATGCATCTATTCAGCATGCCATGCAGGAGAGGCTAAGCTTTCCTGTGACCCAGCAAAACACTGAATCAAGCTCTTCCATCAGTGGAGTGAATGCAGTGCAAGGTTTTCTTGGTACACCAAATCCAAATACAAATACAAATGATAGGGAATCTGTACATGAAGCTGTTCCAGGTGGCAATACTCAACATGTCCCGGACAATGACAATGTCTCTGCTGGCCATATTGCCAGTGGTCTGGATTTCAATCCATCAGCTCCTCCAGTTGCTGACCAGGTTCCATTAGATGGCCCCATTCAGTATCCGTCAATTGATTTGAGCCCTGTTGATGTATCATCTCCAGTAGTTGAGAAACTACATAATGAAGAAGGAAAAACTGCTGGTGGAAGTGGTTCAACGTGTGTGATATGTTTAGATGCTCCAGCAGAAGGGGCGTGCATACCGTGTGGCCATGTTGCCGGATGTATGTCTTGCTTGAATGAGGTTAAAACAAAGAAATGGGGTTGCCCGGTTTGTCGAGCTAAGATAGACCAAATCATAAAGCTATATCATGTTTGA 1395 0.4509 MGQGQSKSELLYQQVSYGNSDGIKTLHREGAGLEWVDREGKTPLIVACMNPELYNVAKTLIELGANINAYRPGRHAGTPLHHAAKRGLESVVKLLLLHGANPLVLNDDCHTALEVARAKGNSNVVRAIESHICLFSGWLREFHGPGFLEVVAPQLVSRKVWVVVLPVGTRILTSPYKLELAVYSTLQDARPRTVVALWKANLEEPKLRQSDPSVTISDKTTKTRLRFGPASENDRQQLTWFSNACKGIPQVNPTFLHNNVATIPPTAPPAAEDPELAMAIHASIQHAMQERLSFPVTQQNTESSSSISGVNAVQGFLGTPNPNTNTNDRESVHEAVPGGNTQHVPDNDNVSAGHIASGLDFNPSAPPVADQVPLDGPIQYPSIDLSPVDVSSPVVEKLHNEEGKTAGGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00310 464 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Car04g00310 464 PANTHER ROLLING PEBBLES, ISOFORM B 1 464 - -
Car04g00310 464 ProSiteProfiles Zinc finger RING-type profile. 413 452 IPR001841 -
Car04g00310 464 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Car04g00310 464 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 464 - -
Car04g00310 464 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Car04g00310 464 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Car04g00310 464 Pfam Zinc finger, C3HC4 type (RING finger) 411 458 - -
Car04g00310 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 392 463 IPR013083 -
Car04g00310 464 SMART ring_2 413 451 IPR001841 -
Car04g00310 464 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Car04g00310 464 SUPERFAMILY RING/U-box 412 458 - -
Car04g00310 464 Gene3D - 3 144 IPR036770 -
Car04g00310 464 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Car04g00310 464 SMART ANK_2a 75 104 IPR002110 GO:0005515
Car04g00310 464 SMART ANK_2a 39 69 IPR002110 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00310 403 461 C3H Transcription Factor Family AT3G06140 33.898 6.92e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00310 - - gmx:100789309 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00310 04 3211868 3219088 Car04g00310 04 3211868 3219088 ECH