Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00307 ATGGATAGTTGCTGGTTTCCTAAGTTCAAGTCAAAGGACAAAATGCAGTCTTCTAAAAAGAAGGAAACTGCAGGCACTGCAAAAGAAGCGTCAAAACCACCAACAAATGAAGAAGCTCCTTCAAATGTGACCAAACAGAAGGTCGAAGCTGCGAAGCAGTACATAGAAAACCATTATAAGAAGCAGATGAAAGACCTGCAGGAGAGAAAAGAACGACGTAATATGATAGAAAAAAAGTTGGCTGATGCTGAAGTCTCTGAGGAAGAGCAGAACAACTTGCTTAAGTATTTTGAGAAAAAGGAGAGAGAATACATGCGACTTCAGAGGCATAAGATGGGGGCTGATGATTTTGAGCTCCTGACAATGATAGGGAAGGGTGCATTTGGAGAGGTCAGAATCTGCCGAGAGAAGGCAACTGGTCATGTATATGCTATGAAGAAGCTTAAGAAATCAGAGATGCTTCGCCGGGGCCAGGTTGAACATGTAAAAGCTGAGAGGAACCTACTTGCAGAAGTTGACAGCATTTACATTGTAAAGCTCTATTGTTCCTTTCAAGACGAAGGTTATTTATATCTTATAATGGAGTATCTTCCTGGCGGCGATATGATGACATTGCTCATGCGGAAGGATATCCTGACAGAATATGAGGCCAGGTTCTATGTTGGGGAGACCATCCTAGCTATAGAATCAATTCATAAATATAATTATATTCACAGAGATATCAAGCCTGATAACTTGCTGCTAGATAGAAATGGTCACATGAAATTATCAGACTTTGGATTATGTAAACCACTAGACTGCAGTAATCTTCAGGAAAAGGACTTCTCTACCGGAAACAACAGAAGTGGAGCCCTTCAGAGCAATGGACATCCTGTGGCTCCTAAAAGGACTCAGCAGGAGCAATTGCAGCATTGGCAAAAAAATAGGCGAATGCTTGCCTATTCTACAGTAGGAACACCTGATTATATTGCCCCTGAAGTTCTACTGAAGAAAGGATATGGCATGGAATGTGATTGGTGGTCTTTGGGAGCTATAATGTATGAAATGCTAGTGGGGTATCCACCCTTTTATTCAGATGAACCAATGTTGACTTGTAGAAAGATAGTAAATTGGAGAGCTTATTTGAAATTTCCAGAAGAAGCTAAACTATCACCAGAAGCAAAGGATCTTATTAGTAGACTCTTATGTAATGTGGAACAGAGGCTTGGAACCAAAGGAGCTGATGAAATAAAGGCTCACCCATGGTTCAAAGGGGTTGAATGGGATAAATTGTACCAAATGAAAGCTGCTTTTATTCCTGAGGTCAATGATGAATTAGATACTCAAAATTTTGAGAAATTTGATGAGGTGGACGACCAATCCCAACCTTCCTCAAAATCAGGGCCATGGAGGAAGATGCTGTCTAAGGATGTTAACTTTGTTGGATACACATATAAGAACTATGAAATCGTGAATGATGATCATCTACCTGGAATTGCTGAATTGAAGAAGAAGAGCACAAAACCTAAACGGCCTTCCATTAAAACCTTATTTGACGATGAATCGTCTACGGCTTCCAATCAACCTGTTGAAGGGAGCTTCTCAAAACTCTTACCTACTCATCAGGAAGTTCCTAAGAAGAGCGAATAA 1629 0.4045 MDSCWFPKFKSKDKMQSSKKKETAGTAKEASKPPTNEEAPSNVTKQKVEAAKQYIENHYKKQMKDLQERKERRNMIEKKLADAEVSEEEQNNLLKYFEKKEREYMRLQRHKMGADDFELLTMIGKGAFGEVRICREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSIYIVKLYCSFQDEGYLYLIMEYLPGGDMMTLLMRKDILTEYEARFYVGETILAIESIHKYNYIHRDIKPDNLLLDRNGHMKLSDFGLCKPLDCSNLQEKDFSTGNNRSGALQSNGHPVAPKRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMLTCRKIVNWRAYLKFPEEAKLSPEAKDLISRLLCNVEQRLGTKGADEIKAHPWFKGVEWDKLYQMKAAFIPEVNDELDTQNFEKFDEVDDQSQPSSKSGPWRKMLSKDVNFVGYTYKNYEIVNDDHLPGIAELKKKSTKPKRPSIKTLFDDESSTASNQPVEGSFSKLLPTHQEVPKKSE 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00307 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 518 - -
Car04g00307 542 SMART pkinase_C_6 417 480 IPR000961 GO:0004674|GO:0005524|GO:0006468
Car04g00307 542 Pfam Protein kinase domain 118 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00307 542 MobiDBLite consensus disorder prediction 495 510 - -
Car04g00307 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Car04g00307 542 MobiDBLite consensus disorder prediction 1 27 - -
Car04g00307 542 Gene3D Transferase(Phosphotransferase) domain 1 308 436 - -
Car04g00307 542 Gene3D Transferase(Phosphotransferase) domain 1 201 275 - -
Car04g00307 542 ProSiteProfiles Protein kinase domain profile. 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00307 542 SMART serkin_6 117 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00307 542 Gene3D Phosphorylase Kinase; domain 1 88 200 - -
Car04g00307 542 MobiDBLite consensus disorder prediction 1 45 - -
Car04g00307 542 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Car04g00307 542 Pfam Protein kinase C terminal domain 435 478 IPR017892 GO:0004674|GO:0005524|GO:0006468
Car04g00307 542 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 39 518 - -
Car04g00307 542 SUPERFAMILY Protein kinase-like (PK-like) 92 464 IPR011009 -
Car04g00307 542 CDD STKc_NDR_like 115 479 - -
Car04g00307 542 MobiDBLite consensus disorder prediction 511 528 - -
Car04g00307 542 MobiDBLite consensus disorder prediction 495 542 - -
Car04g00307 542 Coils Coil 66 86 - -
Car04g00307 542 ProSiteProfiles AGC-kinase C-terminal domain profile. 417 488 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00307 Car-Chr4 3182877 3188229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00307 25 542 AGC Kinase Gene Family AT3G23310 81.958 0.0 880
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Car04g00307 Pkinase 2.4e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00307 K08790 - gmx:100783095 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00307 04 3182877 3188229 Car04g00307 04 3182877 3188229 ECH