Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00287 ATGTGGTGTTTTAGTGTGAGAGCTAAGAGATTGATAAGTAAGAAAAAGTTTAGCATTAGAGGGAAATTGAGGAAGATGATCAAGTGTGTGTGTTCTAGTGAGAAGTTAGATTTAGAAGAAATGAATTATTCATCAGAGTCTCTTGCAACTAGGGACTATTCAGCAACAGCAAGTGGTTATTCATCACGTCCTCGTGAAAATGAATCAAAGGTGGATAATAGTAACATTGAAGAAGCAGAGTCCTCTCTTCGTGAAAGTGGCTATTTAAACTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAGAAAGGAAACATTGAAGCTGCACTTCATGTATTTGAAGGAATTGATATTGCTGCTGTCATTCCCAAGATGAAAATGTGTATATCTAAAAGATGTGAATCCAATAATAAACGCGGTTCACAAAGTGATTCAGTTCCTTCTATGTCAATACATGCTGTTAGTTTACTTCTTGAAGCTGTTTTTCTCAAAGCTAAATCATTGCAGACTCTTGGAAAGTTTCAAGAGGCTGCTCAATCATGCAAAACTATATTAGATACTGTTGAATCTGCATTACCAGAAGGGTGGCCTGAAAACTTTGTTTCAGACTGTAAATTACAAGAGACAGTAACAAAAGCTGTAGAACTGCTTCCAGAGTTGTGGAACCTTGCAGGCTCACCTCAAGATGTTATCTTATCATTTAGGAAGGCATTGCTTTATCATTGGAATCTTGGCATTGAAGCAACTTCAAGAATACAAAAGGAATTCGCATTGTTTCTTTTATACAGCGGTTGCGAAGCCACTTCTCCTTCTCTTCGGTCGCAGTTGGATGGTTCCTTCGTGCCAAGAAACAACATAGAAGAAGCTGTTCTTCTGCTTCTGATTCTGATGAGAAAATCAGTTATTGGAAGCATAGGAAAGGACCCTTCAATAATTCATCACCTTTCTTTTGCTTTAAGTGTTTGTGGTGAATTCCTGACACTGGCTAAACAGGTTGAGGAATTAGTTCCAGAAGATATGAAAAGAAGAGAAAGATATTATACTCTAGCTCTTTGTTACTGTGGAGAAGGTGAAAATATGGTTGCATTGGATCTTTTGAGGAACTTTTTGAATAATAGAGAGAACTCAGATTGCATAGAGGAATTAGTTTTAGCTTCAAAAATTTGTGCAGACAACAAGGTTTGTGTTGAAGATGGAATCAAATTTTCAAGCAAGGCAATTGCTCAGATGTATGGAAAATGCAAGCAAATGGAAGCTATTGCAAACTGTTTACTAGGTGTTCTACTGTCAACAAAATCCAAATCATCTGCTTCAGAATCAGAGAAAATTTTGATACAATCTCAAGCATTTAGTGCTCTACAAGGTGCTGAGGCATTGATGAAAGAAAATGATCCTTACATTGTTCTTAATCTTTGTCTAGAATATGCTGAACATAGGAATTTGAGAATTGCTTTTGATCATGCAAAGAAACTGGTTAAGATGGAAGGTGGATCAAGTGTTACTGGATATATACTACTAGCGCGAATTTTATCGGCTCAAAAGAAGTTTGTTGATGCAGAGATTGTTATTGATGCTGCTATAGATCAAAGTGGAAAATGGGATCAAGGAGAATTGTTAAGGACTAAAGCTAAGCTTCAGATTGCACAGGGAAGATTGAAAAATGCTATTGAGACTTACACTTTTTTTCTTGCTGTTCTTCAAGTGCAAAATAAAAGTATAGGCACTTCAAATAAAGTTATGAAGTGGaagagaaatagtaatagaagactagaaatggaagtaTGGCATGATTTAGCCAATTTGTACACATCCTTGTCACAGTGGAGTGATGCTGAAGTTTGTCTTGCTAAATCTCAAGCTATTAATCCCTATTCTGCTTCTAGATGGCACTCCACAGGTTTACTTTATGAAGCAAGAGGACTTCATCAAGAAGCATTGAAATCATATAAAAAAGCATTAGATATTGATCCAAACCATGTGGCAAGTTTGATATCAACAGCTTGTGTTCTAAGAAAACATGGTGGTGAATCATGTTCAATTGTTAGAAGCCTTCTCAATGATGCATTAAGGATTGACAGAACAAACTCATCTGCATGGTATAATCTTGGACTTCTCTACAAGAATGATTTGGGGACATCAACATTGGAAGCTGCTGAATGTTTTGAGATAGCTGTTATTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2220 0.3608 MWCFSVRAKRLISKKKFSIRGKLRKMIKCVCSSEKLDLEEMNYSSESLATRDYSATASGYSSRPRENESKVDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGNIEAALHVFEGIDIAAVIPKMKMCISKRCESNNKRGSQSDSVPSMSIHAVSLLLEAVFLKAKSLQTLGKFQEAAQSCKTILDTVESALPEGWPENFVSDCKLQETVTKAVELLPELWNLAGSPQDVILSFRKALLYHWNLGIEATSRIQKEFALFLLYSGCEATSPSLRSQLDGSFVPRNNIEEAVLLLLILMRKSVIGSIGKDPSIIHHLSFALSVCGEFLTLAKQVEELVPEDMKRRERYYTLALCYCGEGENMVALDLLRNFLNNRENSDCIEELVLASKICADNKVCVEDGIKFSSKAIAQMYGKCKQMEAIANCLLGVLLSTKSKSSASESEKILIQSQAFSALQGAEALMKENDPYIVLNLCLEYAEHRNLRIAFDHAKKLVKMEGGSSVTGYILLARILSAQKKFVDAEIVIDAAIDQSGKWDQGELLRTKAKLQIAQGRLKNAIETYTFFLAVLQVQNKSIGTSNKVMKWKRNSNRRLEMEVWHDLANLYTSLSQWSDAEVCLAKSQAINPYSASRWHSTGLLYEARGLHQEALKSYKKALDIDPNHVASLISTACVLRKHGGESCSIVRSLLNDALRIDRTNSSAWYNLGLLYKNDLGTSTLEAAECFEIAVILEESSPIEPFR 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00287 739 MobiDBLite consensus disorder prediction 56 77 - -
Car04g00287 739 Pfam Tetratricopeptide repeat 631 661 IPR013105 -
Car04g00287 739 PANTHER PROTEIN NPG1 18 739 IPR043376 -
Car04g00287 739 ProSiteProfiles TPR repeat region circular profile. 628 661 - -
Car04g00287 739 SUPERFAMILY TPR-like 539 709 IPR011990 GO:0005515
Car04g00287 739 Gene3D Tetratricopeptide repeat domain 68 575 IPR011990 GO:0005515
Car04g00287 739 Gene3D Tetratricopeptide repeat domain 579 735 IPR011990 GO:0005515
Car04g00287 739 SUPERFAMILY TPR-like 164 565 IPR011990 GO:0005515
Car04g00287 739 SMART tpr_5 698 733 IPR019734 GO:0005515
Car04g00287 739 SMART tpr_5 594 627 IPR019734 GO:0005515
Car04g00287 739 SMART tpr_5 502 535 IPR019734 GO:0005515
Car04g00287 739 SMART tpr_5 628 661 IPR019734 GO:0005515
Car04g00287 739 SMART tpr_5 160 193 IPR019734 GO:0005515
Car04g00287 739 ProSiteProfiles TPR repeat profile. 628 661 IPR019734 GO:0005515
Car04g00287 739 PANTHER OS10G0471400 PROTEIN 18 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00287 Car-Chr4 2986836 2991072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00287 6 739 Calmodulin-binding Proteins AT4G28600 51.272 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00287 K21843 - gmx:100789469 1147.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00287 04 2986836 2991072 Car04g00287 04 2986836 2991072 ECH