Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00264 ATGGATTCAAGTTCAAACTCAATCCCAAACTCTTCCACTTCAGATTTTTCCTCAGAATCCTCTTCCTTAGAATTCAATTATCTTCCTTTCAACGAAAACGATCCCGAAGAGATGCTTCTGTACGGCATGATAAACGACGCCAACGCCAACAACCTCAACAATCAAGAGGTGAGTTCTGAAGAGAACGAACCGAGGAAGGAGAAGTCGTACCGAGGGGTTAGAAGAAGGCCATGGGGTAAGTTCGCGGCGGAGATAAGGGATTCAACGAGGAATGGAATGAGAGTATGGTTAGGAACGTTTGATAGTGCTGAAGCTGCAGCTTTGGCTTATGATCAAGCTGCTTTTTCAATGAGAGGTTCTTCAGCTATATTGAATTTTCCTGTTGAGATTGTTAGGGAATCACTTAGTGATATGAATTGTGGCTATCAAGAAGGCTGTTCCCCTGTTGTTGCTCTTAAGATGAAACATTCTTTGCGAAGGAAAATTGGTTACAAAAAGAACAAAGAAAGAGATTTAAGGAAAAACAATAATATTGACAATGCTGTTGTGTTTGAAGACCTTGGTGCTGATTATTTGGAACATTTGTTGATGTCCTCTGATGAATTTCCTTATCCTCAGTGA 621 0.4058 MDSSSNSIPNSSTSDFSSESSSLEFNYLPFNENDPEEMLLYGMINDANANNLNNQEVSSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEAAALAYDQAAFSMRGSSAILNFPVEIVRESLSDMNCGYQEGCSPVVALKMKHSLRRKIGYKKNKERDLRKNNNIDNAVVFEDLGADYLEHLLMSSDEFPYPQ 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00264 206 ProSiteProfiles AP2/ERF domain profile. 69 127 IPR001471 GO:0003700|GO:0006355
Car04g00264 206 Pfam AP2 domain 69 119 IPR001471 GO:0003700|GO:0006355
Car04g00264 206 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Car04g00264 206 PRINTS Ethylene responsive element binding protein signature 109 129 IPR001471 GO:0003700|GO:0006355
Car04g00264 206 MobiDBLite consensus disorder prediction 53 72 - -
Car04g00264 206 SUPERFAMILY DNA-binding domain 69 129 IPR016177 GO:0003677
Car04g00264 206 MobiDBLite consensus disorder prediction 1 21 - -
Car04g00264 206 CDD AP2 68 128 IPR001471 GO:0003700|GO:0006355
Car04g00264 206 SMART rav1_2 69 133 IPR001471 GO:0003700|GO:0006355
Car04g00264 206 PANTHER DNA-BINDING DOMAIN 24 198 IPR044808 GO:0003700|GO:0009873
Car04g00264 206 Gene3D AP2/ERF domain 68 129 IPR036955 GO:0003700|GO:0006355
Car04g00264 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 24 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00264 Car-Chr4 2764145 2765216 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00264 28 200 AP2-EREBP Transcription Factor Family AT3G23240 64.286 9.58e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Car04g00264 AP2 7.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00264 K14516 - gmx:100790598 253.062