Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00262 ATGGATAAAGAAGGATCAAGAGGAAGCGTCAAGGACGACGGTGGACATGTTAAGTATCGAGGCGTCCGATGCCGTCCATGGGGGAAATTTGCGGCGGAGATTCGTGACTCAACAAGACAAGGTCAAAGGATGTGGTTGGGAACTTTCAACACTGCTGAAGAAGCCGCTAGAGCTTATGATAGAGCTGCTTATTCTATGAGAGGTTCATTTGCAATTCTTAATTTCCCTAATGAATACCCTATGTCGGTTAATGCAGCAGGTTCTAGTGCCACTTCTGCTTCATCTTCTTCCTCTTCGAGTCATGCAAATGTGGAAGGCAGAGGAAGACAAGTGTTTGAGTTTGAGTATTTGGATGATAAGTTGTTGGATGAGCTTCTTGATTTTGAAAAGAAAAATAATAAGGGACCTTGA 411 0.4331 MDKEGSRGSVKDDGGHVKYRGVRCRPWGKFAAEIRDSTRQGQRMWLGTFNTAEEAARAYDRAAYSMRGSFAILNFPNEYPMSVNAAGSSATSASSSSSSSHANVEGRGRQVFEFEYLDDKLLDELLDFEKKNNKGP 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00262 136 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Car04g00262 136 MobiDBLite consensus disorder prediction 84 105 - -
Car04g00262 136 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Car04g00262 136 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Car04g00262 136 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Car04g00262 136 PANTHER OS09G0571700 PROTEIN 12 130 - -
Car04g00262 136 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Car04g00262 136 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Car04g00262 136 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Car04g00262 136 PANTHER DNA-BINDING DOMAIN 12 130 IPR044808 GO:0003700|GO:0009873
Car04g00262 136 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00262 Car-Chr4 2740168 2740634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00262 13 131 AP2-EREBP Transcription Factor Family AT3G23230 59.677 6.87e-42 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g00262 AP2 8.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00262 - - gmx:100775830 167.933