Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00261 ATGGATCTTGTAAGTAGAAGACACTTGATCCATTTTTCACAACATGGGTCATCACAAATTTCACAATCAAACACACAGGCTCTTTCTCCAATAACAAGTTCAAGTTCAAGTTCAATCTTTCATCCTCATATGCATCATTCTAGCACAAGTTTTCCCATCATTGCAATTGCTATAATAGGAATAATGGCTACAGCTATCTTGCTTGTAAGCTACTACATCTTTGTCATCAAATGTTGTCTCAATTGGCACCGTATTGATCTTCTAAGACGTTTCTCTCCATCTAGAAGGAGACAAGATCCAACAACAATAAACTCACAAGGTACAACAGAACCTCGTGGATTAGATGAAGCATTGATTCGGTTAATCCCAGTGATTCAATACAAAACAGAGTTAGAAGGGAATAATGATAGTAATAGTGAAAAGGGTTTGTTCTGTGAATGTGCTGTTTGCTTGAATGAGTTTCAACAAGATGAAAAACTTAGGATTATACCAAATTGTAGCCATGTTTTTCACATTGATTGCATAGATGTTTGGCTTCAAAACAATGCTAATTGTCCACTTTGTAGAACAAGCATTTCATTGACAAAAAGATTCCATTTTGATCAAATATTTACACAAACACCTTCTTCAAATCAAGATCAAAATTACCCATCTAGGGAAAACATCAATATTGGCGGTGATGAAGATTTTGTTGTGATTGAATTGAGTAACAATAATGATACTTTGGAGTTACCAACACCAAGTTCTATTAGTCCTTCACAAAGGAAGGTTTTAGAGCATAGAAATGTGGAAAAGAAAGCAAGGAAGTTGAATAAAGTTACAAGCTTTGGAGATGAATGTATTGATGTTAGAACAAAAAAAGATGAACAATTTTCAGTTCAACCAATTAGAAGGTCTTTTTCAATGGATTCATCAAGGGATAGACAATTTTATTTAGCAGTTCAAGAAGCTCTAAAGCAGCAAAAGAGGGAAGTCAATGAAGTCAACTCTCTTGAAGGATGCAGTGGTGGTAGTGGTAGAGCTAAAAAATCATTCTTTTCATTTGGATATGGAAGTAGATCCAGAAGTTCTGTTCAACCTGTTTATTTGGACCCCTGA 1098 0.3497 MDLVSRRHLIHFSQHGSSQISQSNTQALSPITSSSSSSIFHPHMHHSSTSFPIIAIAIIGIMATAILLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPTTINSQGTTEPRGLDEALIRLIPVIQYKTELEGNNDSNSEKGLFCECAVCLNEFQQDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTKRFHFDQIFTQTPSSNQDQNYPSRENINIGGDEDFVVIELSNNNDTLELPTPSSISPSQRKVLEHRNVEKKARKLNKVTSFGDECIDVRTKKDEQFSVQPIRRSFSMDSSRDRQFYLAVQEALKQQKREVNEVNSLEGCSGGSGRAKKSFFSFGYGSRSRSSVQPVYLDP 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00261 365 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Car04g00261 365 CDD RING-H2_PA-TM-RING 146 189 - -
Car04g00261 365 PANTHER RING-H2 FINGER PROTEIN ATL16 26 364 - -
Car04g00261 365 SMART ring_2 147 188 IPR001841 -
Car04g00261 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 194 IPR013083 -
Car04g00261 365 SUPERFAMILY RING/U-box 146 196 - -
Car04g00261 365 PANTHER RING-H2 FINGER PROTEIN ATL16 26 364 IPR044600 GO:0016567|GO:0016740
Car04g00261 365 Pfam Ring finger domain 146 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00261 Car-Chr4 2718357 2720001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00261 42 365 C3H Transcription Factor Family AT1G04360 50.000 2.38e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00261 - - gmx:100775286 471.47