Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00252 ATGTTAGGTGGGTTATCTGGGGTTGACCCAGGAACCCATTCACCCAATCTTGTAAACAAACACCACAACACAATCAACgaagaagaagaagaagaagacgacaaccatgaagatgaaccaagagaagGTGCAGTTGAAATCGGAAACCGCAGACCAAGAGGAAGACCACCTGGATCCAAAAACCGACCTAAACCACCCATCTTTGTAACAAGAGATAGCCCAAATGCTTTGAAAAGCCATGTGATGGAGGTAGCCGGTGGAGCTGATATAGCGGAAAGTGTCGCACAATTCGCTAGGAAGCGTCAACGTGGCGTTTGTGTTCTAAGTGGAAGTGGTTCAGTAGCTAATGTTACTCTTAGACAACCTTCAGCTCCTGGTGCTGTTGTAGCACTTCATGGTAGGTTTGAGATTTTGTCCTTAACAGGGACATTTCTACCTGGTCCTGCTCCTCCAGGGTCAACTGGTTTAACAGTCTATCTGGCTGGAGGACAGGGTCAGGTAGTTGGAGGTTGTGTTGTTGGAACTCTTGTTGCTGTTGGACCTGTTATGCTTATTTCCGCTACTTTTACTAATGCAACTTatgaaagacttccacttgatgataatgatgatgatgataataataataataataataacaacgaaggactgaGTTCTGCGGCCGGTGCACAAGGTGGAGGTGGATCTCCTCCGCCGGGAATTGGAGGTCATCAATTGCAAGGTGGGATTCCAGATCCATCTTCTTTGCCTTTATATAATTTGCCACCAAACTTGTTGCCTAATAATGGAGGGCAGATGGGACATGAGGCAGCTCTTGCTTGGGCTGCTCATGGAAGGCCACCTTACTAA 849 0.4099 MLGGLSGVDPGTHSPNLVNKHHNTINEEEEEEDDNHEDEPREGAVEIGNRRPRGRPPGSKNRPKPPIFVTRDSPNALKSHVMEVAGGADIAESVAQFARKRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGCVVGTLVAVGPVMLISATFTNATYERLPLDDNDDDDNNNNNNNNEGLSSAAGAQGGGGSPPPGIGGHQLQGGIPDPSSLPLYNLPPNLLPNNGGQMGHEAALAWAAHGRPPY 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00252 282 PIRSF ESCAROLA 8 282 IPR014476 GO:0003680
Car04g00252 282 MobiDBLite consensus disorder prediction 198 249 - -
Car04g00252 282 Gene3D - 78 205 - -
Car04g00252 282 MobiDBLite consensus disorder prediction 1 74 - -
Car04g00252 282 PANTHER DNA-BINDING PROTEIN-LIKE 24 282 - -
Car04g00252 282 Pfam Plants and Prokaryotes Conserved (PCC) domain 79 190 IPR005175 -
Car04g00252 282 SUPERFAMILY AF0104/ALDC/Ptd012-like 75 201 - -
Car04g00252 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 282 IPR014476 GO:0003680
Car04g00252 282 CDD DUF296 78 161 IPR005175 -
Car04g00252 282 ProSiteProfiles PPC domain profile profile. 74 211 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00252 Car-Chr4 2630842 2631876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00252 40 282 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 63.265 4.89e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00252 - - var:108341460 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g03091 03 75808250 75808920 Car04g00252 04 2630842 2631876 ECH
Car04g00252 04 2630842 2631876 Car04g00252 04 2630842 2631876 ECH