Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00246 atggattcggatcaaggaaagCTTTTCATCGGTGGGATTTCATGGGATACTAATGAGGAGAAACTGAAGGAACATTTTGGAAACTATGGTGATGTGTTGAACACTTCAGTCATGAGAGAGAAGAACACTGGTAAACCTAGAGGCTTTGGTTTTGTTGTCTTCTCAGATCCTTCTGTTCTTGATAGGGTTCTTGAAGACAAGCATGTTATTGATGGCAGAACGGTTGATGCCAAGAGAGCTTTCTCAAGAGAGGACCAACAGATTTCTGTCACTTCGAGAACTGGAAACTCGAATTCTGGCATGAATTCGGGTAATGGGGGGAATGTCAGGACTAAAAAGATATTTGTTGGAGGGTTGCCTCCCACTCTGGCAGAAGAAAAATTCCGCCAGTACTTTGAGGCTTATGGACATGTAACTGATGTTGTAGTCATGTATGACCAGAATACTGGACGACCACGAGGATTTGGATTTATTACATTTGATACCGAGGAGGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAGGTAGAGGTGAAGCGTGCACTTCCAAAGGATGCCAATCCTGGTGCAAGTAGCCGAATGATGGGAGGTTCTGGAGGTGGCAGTGGTGGAATCGGTGGTTATCAAGGGTATGGAGCTTCTGGTGGCAATCAAAATGCATATGATGGTCGTACAGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCAGGTGGATTCCCACCTTATGGTTCATCTGCTTACAGTGCTGCTGGATATGGGTATGGTTCAGCTAGCAATGGTCTTGGTTATGGTGCAGCGTATGGAAGTTACGGCGGTGCTGCTGCCGGGTATGGTGGACCTGCTGCTGCAACATATGGGAACCCCAATGTCCCTAATGCTGCTTATGCAGGTGGTCCACCAGGTGGGCCAAGGACTTCATGGCCTGCTCAGGCTCCCTCTGGATATGGCTCTATGGGTTATGGGAATACTGCTGCTTGGGGTGCTCCAAGTGGTGGTGCTGGATCTGCTGCTGCATATGGGAATCAAGGTTATGGATATGGTGGCTATGGCGGTGGGTATGGTGGAAGTGACAGTTCTTATGGGAATCCAGGTGTATATGGTGCTGTTGGTGGGCGTACTGGGAGTGCTCCAAATAGCAATGCTAGTGGGAGTGAGCTACAAGGTAGTGGTGGCAGTGGCAGCTATATGGGCAGTGGCTATGGGGATGCAAATGGAAATTCTGGTTATGGAAATGCAGCTTGGAGATCTGAACAGGCTCAAGCATCTGGTAATTATGGGACTCCTCAGGGAAATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGGCCAACAGCACGGCAAAGGAGTTACTCACGTTCATTATCCATACACAATGGGACTGGAGGAGAGGTGCACCAGTATTGAAGTGGAAGCCAAGTGTCCACTCATGGCTAAGGAATGA 1482 0.473 MDSDQGKLFIGGISWDTNEEKLKEHFGNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISVTSRTGNSNSGMNSGNGGNVRTKKIFVGGLPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGASSRMMGGSGGGSGGIGGYQGYGASGGNQNAYDGRTDSSRYMQPQSAAGGFPPYGSSAYSAAGYGYGSASNGLGYGAAYGSYGGAAAGYGGPAAATYGNPNVPNAAYAGGPPGGPRTSWPAQAPSGYGSMGYGNTAAWGAPSGGAGSAAAYGNQGYGYGGYGGGYGGSDSSYGNPGVYGAVGGRTGSAPNSNASGSELQGSGGSGSYMGSGYGDANGNSGYGNAAWRSEQAQASGNYGTPQGNGGQVGYGGGYGGAQSRQGQQHGKGVTHVHYPYTMGLEERCTSIEVEAKCPLMAKE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00246 493 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Car04g00246 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Car04g00246 493 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Car04g00246 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Car04g00246 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Car04g00246 493 Gene3D - 4 88 IPR012677 -
Car04g00246 493 MobiDBLite consensus disorder prediction 427 462 - -
Car04g00246 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Car04g00246 493 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 457 - -
Car04g00246 493 MobiDBLite consensus disorder prediction 84 107 - -
Car04g00246 493 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Car04g00246 493 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Car04g00246 493 Gene3D - 107 231 IPR012677 -
Car04g00246 493 SMART rrm1_1 7 78 IPR000504 GO:0003723
Car04g00246 493 SMART rrm1_1 113 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00246 Car-Chr4 2570884 2575850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00246 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.881 1.34e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00246 K14411 - gmx:100786882 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00246 04 2570884 2575850 Car04g00246 04 2570884 2575850 ECH