Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00239 ATGTTGGAAGACATTTTCGATCCCGATCAGCCACTCCCATCAAATTTAAAGGAGGAGCAACAACAACATCAACTTTCCGTTGACGAAATTTCAAGCCCTCTAAGCGCTCGAATTTTCGAACTTTGTAACACTGAATTATTCCCAGAAGCATTGCAGAATTCTGAGGTTACATCAAGCTCAAATTGTTGCTATGAAGAGAATTCATCATATACAACAAACATTTTAGATGTAGAAAATAAGTTCAATGGcaatagcaataacaataacacagttactactccaactagcacaaacaacaacaacaacaacaacacaaacaGTAGTACTAATCTATCTGTTATCTTTGATTCACAAGAAGAAATTGACAATGACATCTCTGCCTCCATAGATTTCTCACTATCACCATCTTTCAATGTTCAATCATTCCTACCAGTTACAACATCAAATCAAGAACAATTTGATTTCACATCTGTTCAGCATCCTCCTCATGTTCAACTTACATCATGTTCAGCTGCTGAAGGGTTTTCACAGTATCATCAAAATGACCATTCTTCAGTTGCACCTCTTATGGGAGCTCCATTGGGATTACCACCTGTTTTTGAAGAAGATTGCATAACTTCTGTTCCTTCTTATGTTCCTTTGAACCCTTCATCTCCTTCTTGCAATTATCTTAGTTCTGCTATGCCGTCTTATATGCCACCTGCTCCACTTGCTACTTCTTTGTCTGCTGATAGTTCTGGTTTGTTTGGTGGAAATATTCTTCTTGGTCCGGAACTTCAGACACAAGAACTTGATTATCAAGGAGAAAATGGTAGAATTTATTGTGCAGATCCAATTCAGAGGGTGTTTAACCCTCCTGACCTTCAGGCACTTAATACTGAGAGTCAGCAACTAGTAACTGGGGCTGGTAGTTCTGCCACTCTAACACCAGAAATCTCAAACTTGGAGGACTCAACCTTCAAGGTTGGAAAACTTTCTGTTGagcaaaggaaagaaaagattcacagatacatgaagaaaagaaatgaaagaaaCTTCAGCAAGAAAATTAAGTATGCGTGCCGAAAAACTCTGGCTGATAGCCGACCTCGAGTGCGTGGAAGATTTGCAAAGAATGATGATTTTGGAGATTCACATAGAACTGCCAGTGGCAATCATgaagaagaagatgaagaagaGGCAGTTGTGAAAGAGGAAGATGATATGGTTGATTCCTCGGATATATTTGCTCATATCAGTGGTGTGAACTCCTTCAAATGCAACTATTCCATCCAATCCTGGATTTGA 1287 0.3528 MLEDIFDPDQPLPSNLKEEQQQHQLSVDEISSPLSARIFELCNTELFPEALQNSEVTSSSNCCYEENSSYTTNILDVENKFNGNSNNNNTVTTPTSTNNNNNNNTNSSTNLSVIFDSQEEIDNDISASIDFSLSPSFNVQSFLPVTTSNQEQFDFTSVQHPPHVQLTSCSAAEGFSQYHQNDHSSVAPLMGAPLGLPPVFEEDCITSVPSYVPLNPSSPSCNYLSSAMPSYMPPAPLATSLSADSSGLFGGNILLGPELQTQELDYQGENGRIYCADPIQRVFNPPDLQALNTESQQLVTGAGSSATLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDSHRTASGNHEEEDEEEAVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00239 428 Pfam CCT motif 330 372 IPR010402 GO:0005515
Car04g00239 428 MobiDBLite consensus disorder prediction 1 25 - -
Car04g00239 428 ProSiteProfiles CCT domain profile. 330 372 IPR010402 GO:0005515
Car04g00239 428 MobiDBLite consensus disorder prediction 81 106 - -
Car04g00239 428 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 27 428 - -
Car04g00239 428 MobiDBLite consensus disorder prediction 368 396 - -
Car04g00239 428 PANTHER CCT MOTIF FAMILY PROTEIN 27 428 - -
Car04g00239 428 MobiDBLite consensus disorder prediction 368 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00239 Car-Chr4 2523696 2527748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00239 330 388 C2C2-CO-like Transcription Factor Family AT5G57660 48.438 1.00e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Car04g00239 CCT 5.7e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00239 - - aprc:113871720 586.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00239 04 2523696 2527748 Car04g00239 04 2523696 2527748 ECH