Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00231 ATGTATTCAGGTGTCATTGAAGGAAACACAAGATGGTGTGTAATAGAAGAAGATGGATGGAGAAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTCATTGAGTATGTCAAACTGCATGGTGAAGGAAGATGGAACTCTGTTGCTAGCCTTGCAGGACTAAGAAGAAATGGGAAAAGTTGTAGATTGAGATGGGTGAATTATCTGAGACCAGACCTCAAGAAGGGTCAGATAACACCACAAGAAGAAAGCATAATCCTAGAGCTTCATGCTAGGTGGGGAAATAGGTGGTCAACAATTGCAAGAAATTTACCAGGACGAACTGACAACGAGATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAAGCAAAAAAAACCGCGGATGCGGCCGATAAGACAAAAAAGGTTTCCTTAAGGaagcagaaccaacaacagataaaacaacagcaacagattcaacagcaacaacaaatacaaTATAACTTTGACATGAAAGGGATCTTAGAGTTGCTTGAGGAAAATGAGTATAGTGTGCCTTCTACATCTCAAGAGACACAAGAAATGGTTACTATGTGTCCAGAAACAACAGAACAACATGGCTACTTCTACTCTATGCTCAATGGTAATTGTAATGTCTATGCAGATGAGTCTTCAAATGAAGAAATTTTGTGGGATGGTCTTTGGAACTTGGATGATGTTCTTGGAAATTCAATGCAGCTAATGCTACAAGCAAAGCCAACCAATGTGCACAATTTAGTTACTCCTTTTTGTTAA 777 0.3629 MYSGVIEGNTRWCVIEEDGWRKGPWTSEEDKLLIEYVKLHGEGRWNSVASLAGLRRNGKSCRLRWVNYLRPDLKKGQITPQEESIILELHARWGNRWSTIARNLPGRTDNEIKNYWRTHFKKKAKKTADAADKTKKVSLRKQNQQQIKQQQQIQQQQQIQYNFDMKGILELLEENEYSVPSTSQETQEMVTMCPETTEQHGYFYSMLNGNCNVYADESSNEEILWDGLWNLDDVLGNSMQLMLQAKPTNVHNLVTPFC 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00231 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Car04g00231 258 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Car04g00231 258 CDD SANT 24 69 IPR001005 -
Car04g00231 258 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Car04g00231 258 PANTHER MYB TRANSCRIPTION FACTOR 1 246 - -
Car04g00231 258 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Car04g00231 258 CDD SANT 79 120 IPR001005 -
Car04g00231 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 246 IPR044676 GO:0003700|GO:0006355|GO:0043565
Car04g00231 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 69 IPR017930 -
Car04g00231 258 Coils Coil 136 156 - -
Car04g00231 258 Gene3D - 22 74 - -
Car04g00231 258 Gene3D - 79 123 - -
Car04g00231 258 SMART sant 21 71 IPR001005 -
Car04g00231 258 SMART sant 74 122 IPR001005 -
Car04g00231 258 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Car04g00231 258 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00231 Car-Chr4 2453920 2455275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00231 17 258 MYB Transcription Factor Family AT4G13480 53.612 3.06e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car04g00231 Myb_DNA-binding 4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00231 K09422 - gmx:100782089 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00231 04 2453920 2455275 Car04g00231 04 2453920 2455275 ECH