Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00219 ATGGAAATAGAAGCAAGTAAAGCATCATTAGGAAATGATGGTGTTGTAACAAATTTACCAACTTTGAGTCCTTTGAGTGAAACCCTTTGGAGAGAAAAAACAAACACAGAATTGATTGGTGATGTTTCAGCAAGATTAACATGGAAAGATGTTACTGTTATGGTAACTCTTAGCAATGGTGAAACACAAAATGTTTTAGAGAATTTAACTGGTTTTGCTGAACCAGGAACTTTTACTGCTCTTATGGGACCTTCTGGCTCTGGAAAATCAACTCTTCTTGATGCACTTTCTAGTCGTTTAGCTTCAAATTGTTTTCTTTCTGGAACTATTCTTCTTAATGGTCGCAAAGAAAAGCTATCTTTTGGAACTGCTGCTTATGTAACACAAGACGACAACTTAATTGGAACGTTAACCGTACGAGAAACAATATGGTATTCAGCACGTTTGCGATTACCAGATAAAATGGCAAGGTCAGATAAAAAAGCACTTGTTGAAAGCACGATTGTAGAAATGGGTCTTCAAGATTGTGCCGACACAGTTATTGGAAATTGGCACTTGCGTGGAATAAGTGGTGGTGAAAAAAGAAGAGTTAGTATTGCTTTGGAAATATTGATGAGACCTAGATTGCTTTTCCTTGATGAACCTACCAGTGGTCTTGACAGTGCTTCAGCTTTCTTTGTGACTCAAACACTACGTGCATTAGCAAGGGATGGAAGAACAGTTATAGCTTCAATTCATCAACCTAGTAGTGAAGTCTTTGAACTATTTGATCAATTGTATTTGCTTTCTGGTGGCAAAACTGTTTATTTTGGTCAAGCTTCAGAAGCATACGAGTTCTTTGCACAAGCTGGATTTCCATGCCCTGCTTTGAGGAACCCCTCTGATCATTTCCTTAGATGCATCAATTCTGATTTTGATAAAGTCAAAGCTACTCTTAAAGGATCCATGAAATTGAGGTTTGAAGGAAGTGATGATCCTCTAGACAAGATCACAACTGCTGAAGCTATAAGAACTCTAATTGATTTCTACCGCACTTCTCAGCACTCTTATGCTGCAAGACAAAAAGTTGATGAAATATCCAAAGTTAAGGGGACAGTGCTTGAAGCTGGAGGAAGTGAAGCTAGTTTCTTGTTGCAATGTTACATATTAACAAAACGTTCATTCAATAACATGTCAAGGGATTTTGGTTACTATTGGCTTAGGCTTGTTATCTACATTGTTGTCACTTTTTGCATTGGAACAATTTACTTGAATGTGGGAACTGGCTACAACTCTATTCTGGCTAGAGGTTCATGTGCATCTTTTGTCTTTGGTTTTGTCACCTTCATGTCAATTGGTGGATTTCCTTCCTTTGTTGAAGATATGAAGGTTTTTCAAAGGGAGAGGCTAAATGGACACTATGGTGTGACTGCATTTGTTATAAGCAACACATTATCTGCAACACCATTCTTAATATTAATTACTTTTCTCTCTGGAACAATTTGTTACTTCATGGTTCAACTACATCCTGGCTTTTCCCATTACATTTTCTTTGTGTTGTGTCTCTATGCAAGTGTCACAGTTGTTGAAAGCTTAATGATGGCAATTGCTAGTATTGTTCCTAACTTCCTCATGGGAATTATCATTGGAGCTGGGATTCAAGGTATATTCATGTTGGTCTCTGGCTACTTTAGGCTCCCACATGATATCCCAAAGCCTTTTTGGCGATATCCAATGTCATACATTAGTTTCCACTATTGGGCATTACAGGGTCAATACCAAAACGATCTTAAGGGTTTGATATTCGACAACCAGACACCTGATCTTCCAAAGATACCAGGCGAATACATCTTGGAGTATGTATTCCAAATCGACGTCAAAAGATCAAAATGGATAGATTTAATTGTGATCTTAAGCATGATTATCATCTACCGCATTATTTTCTTCATCATGATTAAAATCAATGAAGATGTTACTCCTTGGGTTAGAGGGTATCTTGCTAGGAGAAGAATGCAACAAAAGAGTGGAGCTCAAAACACAACTATTGCACCTGATGTTCTCACTCAATCTCCATCTTTGAGAGCCTACATTTCTAATCAAAGCTTGAAGATTGAGATTAAAGATAAGAAATTATGTCCTCCAAATTTGAATGAAGATTGA 2139 0.3735 MEIEASKASLGNDGVVTNLPTLSPLSETLWREKTNTELIGDVSARLTWKDVTVMVTLSNGETQNVLENLTGFAEPGTFTALMGPSGSGKSTLLDALSSRLASNCFLSGTILLNGRKEKLSFGTAAYVTQDDNLIGTLTVRETIWYSARLRLPDKMARSDKKALVESTIVEMGLQDCADTVIGNWHLRGISGGEKRRVSIALEILMRPRLLFLDEPTSGLDSASAFFVTQTLRALARDGRTVIASIHQPSSEVFELFDQLYLLSGGKTVYFGQASEAYEFFAQAGFPCPALRNPSDHFLRCINSDFDKVKATLKGSMKLRFEGSDDPLDKITTAEAIRTLIDFYRTSQHSYAARQKVDEISKVKGTVLEAGGSEASFLLQCYILTKRSFNNMSRDFGYYWLRLVIYIVVTFCIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVISNTLSATPFLILITFLSGTICYFMVQLHPGFSHYIFFVLCLYASVTVVESLMMAIASIVPNFLMGIIIGAGIQGIFMLVSGYFRLPHDIPKPFWRYPMSYISFHYWALQGQYQNDLKGLIFDNQTPDLPKIPGEYILEYVFQIDVKRSKWIDLIVILSMIIIYRIIFFIMIKINEDVTPWVRGYLARRRMQQKSGAQNTTIAPDVLTQSPSLRAYISNQSLKIEIKDKKLCPPNLNED 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00219 712 CDD ABCG_EPDR 43 271 - -
Car04g00219 712 Pfam ABC-2 type transporter 246 302 IPR043926 GO:0140359
Car04g00219 712 Pfam ABC transporter 67 217 IPR003439 GO:0005524
Car04g00219 712 ProSitePatterns ABC transporters family signature. 189 203 IPR017871 GO:0005524
Car04g00219 712 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 5 694 - -
Car04g00219 712 Pfam ABC-2 type transporter 379 585 IPR013525 GO:0016020|GO:0140359
Car04g00219 712 Gene3D - 39 284 IPR027417 -
Car04g00219 712 PANTHER OS04G0528300 PROTEIN 5 694 - -
Car04g00219 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 283 IPR027417 -
Car04g00219 712 SMART AAA_5 75 246 IPR003593 -
Car04g00219 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 46 289 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00219 Car-Chr4 2259302 2288827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00219 64 250 Calmodulin-binding Proteins AT2G36910 32.653 1.21e-11 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00219 K05681 - gmx:100803731 1238.79