Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00208 ATGGAAGGAGAAATTAGTAGTAACAAAGACAATAGTATATATGATGACACTggaggaggaggaggaggaggaggaACAAGCCAAGGCAATGATGTCTCAGAGGATAATTTAATTCCAAATCAACAATTTGTCATTACTGGAAGGAGTGGGGCCCACTGGACTTGTCTACCAAAACCATCTCATAATAATAATTATGTTGAATATCTCTCTGAATCCTCAACTTATCTTCCAAACACCGCAACAAATGAGTATGTGAATATCATTGGGGGAAATTATCAAACACTTGGTGGTGGTAATAGGGTTAGTGGAAAAGACAGAGACTCGTTTTACAATGATCATGGAAAAGCTTTTGGGTTTAAACCTGTTGATTCTTCAGCTAATGACTTTGGCATTGGGAAGCGTGTGGGGTATTGGAGACCTGATGAAGTAGAGGAAGCAATTAAAGTTGCAACTGGAAGTAGTCAAGATCTTACCTATGCTGAGGGTCATGCAGCATGGAAAGCAGATTCAGTTGGAGATAAGCACAATGCTTCAAAGTTTGATCCAATGGGAAAAGTTGGTGCACCCTCTTTTCTTCCAAAATCAGGAGGCAGCTCTTCAAATCAGAAAAGTAACAAAACACGTTACACCGACCGTGAACGCAGGCAACGTATCGCTGATAACCTCAAAGCTTTACACGAATTGCTTCCAAATCCAGAAGAGGGTAGTCAAGCTTATGTACTGGATGATATCATTGACTATGTTAAATACTTGCAGCATCAAATAAAGGAATTAAGTGGAAGTAAATTGCAAGCTGACTCAAATGCTATACCACTTGTTTTCCATGAGGGTTATGGACATTATATTAAACAACAGATGTTGGATGAGCCACTCGAAGAGATAATGGGGAAACTACTTGAAGAACATTCAGCAGCAGCAAATCAGCTACTTGAAAATAAAGGTCTTTTTCTGATGCCTATTGCTTTGGTTGATGAATTGAGCCAAGCTATTCAACTGTTTGGTGGAAGTTCACTTGGCTGA 1020 0.3824 MEGEISSNKDNSIYDDTGGGGGGGGTSQGNDVSEDNLIPNQQFVITGRSGAHWTCLPKPSHNNNYVEYLSESSTYLPNTATNEYVNIIGGNYQTLGGGNRVSGKDRDSFYNDHGKAFGFKPVDSSANDFGIGKRVGYWRPDEVEEAIKVATGSSQDLTYAEGHAAWKADSVGDKHNASKFDPMGKVGAPSFLPKSGGSSSNQKSNKTRYTDRERRQRIADNLKALHELLPNPEEGSQAYVLDDIIDYVKYLQHQIKELSGSKLQADSNAIPLVFHEGYGHYIKQQMLDEPLEEIMGKLLEEHSAAANQLLENKGLFLMPIALVDELSQAIQLFGGSSLG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00208 339 MobiDBLite consensus disorder prediction 177 213 - -
Car04g00208 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 323 - -
Car04g00208 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 200 265 IPR036638 GO:0046983
Car04g00208 339 MobiDBLite consensus disorder prediction 1 35 - -
Car04g00208 339 Pfam Helix-loop-helix DNA-binding domain 210 252 IPR011598 GO:0046983
Car04g00208 339 Gene3D - 199 270 IPR036638 GO:0046983
Car04g00208 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 202 251 IPR011598 GO:0046983
Car04g00208 339 SMART finulus 210 257 IPR011598 GO:0046983
Car04g00208 339 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 33 323 - -
Car04g00208 339 CDD bHLH_AtbHLH_like 210 259 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00208 Car-Chr4 2133495 2136612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00208 202 329 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 36.879 4.85e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g00208 HLH 5.3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00208 - - cam:101507064 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00208 04 2133495 2136612 Car04g00208 04 2133495 2136612 ECH