Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00202 ATGGCTGCTCCACCAGTTGGTAATAAGCTCCAAAACATGTTGCAGGCTGCGGTGCAATCTGTTCAGTGGACTTATAGCCTTTTCTGGCAACTTTGTCCTCAACAACTGATATTGATATGGGGTGATGGATATTACAATGGAGCAATAAAGACTAGAAAAACAGTGCAACCAATGGAGGTAAGTGCTGAGGAAGCATCTCTACAAAGAAGCCAACAACTAAGGGAACTGTATGAATCATTATCTGCGGGAGAGACAAATCCACCAACTAGACGACCATGTGCTTCCTTGTCGCCTGAGGACTTAACAGAATCCGAATGGTTTTATTTGATGTGTGTCTCTTTCTCTTTTCCTCCTGGTGTCGGGTTGCCGGGAAAGGCATACACGAGGAGGCAGCATGTGTGGCTCACAGGTGCAAACGAGGTGGACAGCAAAACATTTTCAAGAGCTATTCTAGCCAAGATTCCCACAATCATGTACACCATGGCAGATCCACCGTCCACAAATCTCAACCAAGATGACATGgacgaagacgacgaagaggaagaagaagaagaagatgaagacgaggaatcaggatccgaagatgaaACGGGTGGGCGTAATCGACGTGCAACCTCAATGACGACGGGAATGACGGAGCCGAGTGAATTGATGCAAATCGAAATGCCAGAAGATATTCGAGTTGGTTCACCAAACGATGGATCCAACAACTTGGACTCCAATTTTCATTTGTTAGCAGTGAGTAACCAAGGGAATCCACCAGGACAAGTTGAATCGATTCAGAGGTGGGGCCCAATTGAAGACCCCATGGGTAATTCGCAACATCTTCAACTATCGTCATCAGTGCTTCATCAGCCACTAGAAGAGTTAAGACAACAAGACACACACTACTCTCAAACAGTTTCCAACATCCTCCAAAACAACTCAACCCAATCCCCCTCCATCAATTTCATCACTTACTCCACCCATTCATCTTtcaccatcaccaactccaccaaccaccacttccacgcgccacctcccgactccgccacttcccaATGGCTCCTCAAATACATCCTCTTCACTGTCCCATACCTCCACACCAAAAACCACGACGAAACTTCTCCACAAACCCGCGACACCACCGGAACCGATCCCTCCTCCCGTTTACGCACCAAAGGAACACCGCAAGACGAACTCAGCGCCAACCACGTCCTCGCCGAGCGAAGAAGAAGAGAGAAACTCAACGAGAGGTTCATCATTTTAAGATCATTGGTCCCTTTTGTTACCAAAATGGACAAAGCTTCTATATTAGGCGACACAATCGAGTACTTGAAACAGCTTCGAAGAAAAATTCAAGATCTCGAAACGCGTAACCGTCAAATAGAAACTGAACAACAACAAACGAAGAAGAATGGCGTGACCGTTATGGTGGGCCCCAGTGAGAAGAAAAAAATGAGGATAGTGGAAGAATGTGGGGCCACTAGAGCGAAAGCGGTTGAGGTTGTTGAAACGGTTATTGTCACGTCAGTTCAAGTTTCCATTATTGAAAGTGATGCTTTGTTGGAGATTGAGTGTCCTCAAAGAGAAGGGTTATTGTTGGATGTTATGCAAATGCTTAGGGAGATGAGAATTGAGGTTATTGGTGTTCAATCTTCGCTTAACAATAATAATGGTGTCTTTGTTGCGGAATTAAGAGCTAAAGTTAAGGATAATGGAAATGGGAAAAAAGTTAGCATTGTTGAAGTTAAGAGAGCACTTAATCAAATTATTCCTCATGCCAATTACTAG 1773 0.4106 MAAPPVGNKLQNMLQAAVQSVQWTYSLFWQLCPQQLILIWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYTRRQHVWLTGANEVDSKTFSRAILAKIPTIMYTMADPPSTNLNQDDMDEDDEEEEEEEDEDEESGSEDETGGRNRRATSMTTGMTEPSELMQIEMPEDIRVGSPNDGSNNLDSNFHLLAVSNQGNPPGQVESIQRWGPIEDPMGNSQHLQLSSSVLHQPLEELRQQDTHYSQTVSNILQNNSTQSPSINFITYSTHSSFTITNSTNHHFHAPPPDSATSQWLLKYILFTVPYLHTKNHDETSPQTRDTTGTDPSSRLRTKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIETEQQQTKKNGVTVMVGPSEKKKMRIVEECGATRAKAVEVVETVIVTSVQVSIIESDALLEIECPQREGLLLDVMQMLREMRIEVIGVQSSLNNNNGVFVAELRAKVKDNGNGKKVSIVEVKRALNQIIPHANY 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00202 590 MobiDBLite consensus disorder prediction 373 391 - -
Car04g00202 590 MobiDBLite consensus disorder prediction 161 217 - -
Car04g00202 590 PANTHER TRANSCRIPTION FACTOR TT8 9 587 - -
Car04g00202 590 Coils Coil 432 466 - -
Car04g00202 590 Pfam Helix-loop-helix DNA-binding domain 396 443 IPR011598 GO:0046983
Car04g00202 590 MobiDBLite consensus disorder prediction 363 391 - -
Car04g00202 590 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 395 462 IPR036638 GO:0046983
Car04g00202 590 PANTHER TRANSCRIPTION FACTOR TT8 9 587 - -
Car04g00202 590 Gene3D - 393 467 IPR036638 GO:0046983
Car04g00202 590 SMART finulus 399 448 IPR011598 GO:0046983
Car04g00202 590 MobiDBLite consensus disorder prediction 170 194 - -
Car04g00202 590 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 393 442 IPR011598 GO:0046983
Car04g00202 590 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 154 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00202 Car-Chr4 2070662 2080030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00202 8 587 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 42.809 6.22e-138 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car04g00202 bHLH-MYC_N 4.5e-34 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00202 - - cam:101506726 1099.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00202 04 2070662 2080030 Car04g00202 04 2070662 2080030 ECH
Car03g02618 03 72017471 72022193 Car04g00202 04 2070662 2080030 PCT