Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00188 ATGAGAGAGGGGTTGAGATCTCGGACTCGGTTGGGTGGTGAGGTTTCTAGTGAAGGAGTTGTTCATAAGAGAAGGGTTCGTGTGAAGAATGAGGGTTTAGTTTCAGGTGATGAGGGTTTAGTGGCGCCTACTTCATCGGTCGAGAAGAATGGCGAAGTTGAATGTGATGCGAAAGAAGAATGTGTTTTGGATTTAAACGCGAGTGCGAGTGGAAATGTTGACTTGGCTGAGAATGGGAACAATGAGAGTTGTTTTAGAGATGAGGAGGGTAAGATAGAAGCTGAGGCTGATAAAAAGGGGACTGAAGGGTTGATTCGGAAAGCAAACTGTGACTTGGATTTAAAATTGAGTGTGAGTGGAAATGCTGGCTTGGCTGAGAATGGGAACAATGGGAGATGTGTAAGAGATGAGGATAGTAATGTAGAAGTTGAGGCTGATAAGAAGAAGACTAAAGGGTTGACTGGGAAAGCAGAATGTGACTTGGATTTAAACTTGAGTGTGAGTCGGAATGTTGACTTAACTGAGAATGTGAATAATGAGAGTTGTGTAAGAGATGGGAATAGTAATACAGAGGTAGAAGCTGATGCGAAGGGGGCTGAAGGGTTGATTGAGCGTCGAGTATTGCGCTCAAGGTCTAAGAGGGGCGATGACAAAATATCTTATAATGGAGGGAATGATGGTGTCTTTTCTGGGAGTAATGGAGAAAATGGTGGGTTTGAGAGGAGGATAAAAGTCAAGACGGAGTATGAAGAAGTTGACGAGGATTTAACTGATGGCAACAAGAATGAAAAGGTTAAGGTAAAAGTGGGAGGTCAGGGGAAGAAGTTGAAACGGAAGCGTGGGAGGCCTCCCAAAACAGAGTTAAAAGAGAAAGATCAATTAGTTGATAAGCCACAGCGTAAGCTTGGGAGGCCTCCCAAAACAGAGTTAAAAGAGAACAATCAGTTACTTGATCAGCCACTGCGTAAGCGTGGTAGGCGTCCCAAAACAGAGATAAAAGAGAAGGATTGGTTAGTTGATCAGTCACCGCGGAAGCGTGGAAGACGCCCCAAGACTGACCAACAAAAACATCTCATGACTGTGGGGCATAATAGTAAAGGAAAGGCAAGCCTTCAAGAAGGTAAAGAAGTTTTAACCATAAGAGATGGTTCAAGGACAAATGCAGTTGATAATACATGTTCAAGGAGATCTTCTGGTAAAGAGTTAAAAGAGAAGGGATCTTCTCCTCTGAGGAAAAGTAAATTGCGAAAGGTTTTGAAAACCGAGGTTGATGGAATGGCCTCACCGTTGAGATCAAATACTTTGAGTACACATGCTGCTAAAAAGGGGGGAATGATTGAGAAAAAGAAGCTAGTGAGGGATCAAATAATGGAACGCCTCTCAGCTGCAGGATGGACTGTTGACCGTAGACCTAGGAATGGCAGAAATTATATTGATGCTGTGTATGTTGGTCTGGACAAAAGTACACATTGGTCAATCACCTTGGCCTACAAGAGGTTGAAAGAGCATTATGAAGCTGGGGATGGTGAAGGTAAGATGTACAAGCCAGGTTTCGAATTTATACCAATACCAGAGGAAGATTTCAATTTACTAACTAGAGTAGTAACTAAAAAGAGAGTAAGTAAAAAAGTGAAATGTGTGTCATTTGGAGGAAAGGGTGGAAAGCGAGTTGATGGAGTCAATGGAAAAAAGAAAAAAAGAAAACCAGGTTCTGGTGCTGGCATGGGTAAGCCAGTGAAGGGGAAAATGAAAAGGAAACGATCACTTCCTGGTGAGGGCAACACAAATGTTACATTGCCTAACAGGCTGCCTGTTCTAGCCAGGGATCATAAGCGGCACAAAACACATAAGAAGACACGGTGTGCTCTGTTGGTTCGTGATGCTATGGAGGAGGTAGATTCTGAAATTAATGGATATGTTCCATACAGTGGAAAACGAACTGTACTTGCCTGGATGATTGATTTGGGCACAATCCCCCAAAATGGGAAGGTCCATTATATGCAAGACAGGTCGGAAAGTCCTTTACTGGAAGGTAAGATCACAGGAGATGGCATTCTCTGTGGCTGCTGTAATAAAATCACAACAATTTCAGACTTTGAAGCTCATGCAGGAAGCAAGCAATCTGATCCTCTTAAAAATATATATACGGATGAAGAAACTTCGCTCCTACAATGCCTGTTAGATTCATGGAACAAACAAGACGAGTCTGAACGCAATAGTTTTCATTTTGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGACCTGATCTGCTGTGATAGTTGCCCATCAACATTCCATAAAAGCTGCTTGGATACAAAAAAATTCCCATCTGGTGACTGGCACTGCATTTACTGTTGTTGCAAATTTTGTGGGTTGGTTGGTGGAAGTTCAAACCAAAGTGTAGCCAATGATGATTTTACTATGCCTGCATTGCTCACATGCCATTTATGTGAGGAAAAATTTCACATATCTTGTATTGAGGCAAATGGTGGTAAGACTGATGATATCAGGGAGGCATTATCTTGTGGAAACAAATGTCAAGAGTTATCTGAGAGACTTGAAATGCTTCTTGGGGTTAAACATGACATCGAAGATGGATTTTCTTGGTCTTTTATTCGGCGGTCAGATGCTGGGTTTGATGCTTCTCAGACAAAACCTCGGATGATAGAATGTAATTCTAAGCTGGCTGTTGCATTGTCAATAATGAACGAGTGCTTCATGCCATTTATTGATCATAGAAGCGGGACCAATCTGTTCCGCAGTATTCTATATAGTTGTGGGTCAAACTTCAAACGCCTGAACTATAGTGGGTTTATTACTGCAACTCTAGAGAGAGGTGATGAGATCATCTGTGTCGCATCTATCAGAATACATGGGAGCCAACTTGCTGAGATGCCATTTATTGGAACTCGCTATATGTATAGGCGACAAGGAATGTGCCGCCGGCTTCTAAATGCCATTGAACGGGCACTCAGTTCTTTACATGTTGAGTTATTGGTCATACCAGCTATATCAGAGCTTAGAGAAACCTGGACTTCTGTTTTTGGGTTTGAGCCACTTGATCAAATAAGCAAGCAAATAACAAAGAGCATGAATCTGCTGGTATTCCCTCACGTAGATTTGTTGCAGAAGAAGATTTCAAGGCTTAAAATTGCTAATGAAAGTTTGCTTCTTACTGGAGTTTCCGATCATAAGAAGACTCATCTGGACGAATCAGATTCATCTGGATCTGATTGTTGCAAGAAAAATGAAAAAGCTATATCTATTGAATCTGATTGTGGTCATTTTGTGAACTCATTGAATAACGCACCTGGCATTACTAGCAACACCATACAGAATAGTAAATCTCCAACAGATGTCACATGTCAAGCTGTATGTCAGACTGTTCATGAAAATTTGGTGGTGGATAACAAAAGCACCGTAAATGCACCTGATTATGTGGATAATTCTTGTTGCCAAGAAGATAAGGAAAGGCGATGTCTCAGTATGCCTTGTATTAACACTGGAGGTTCAGAAGGAAATTATGTTGGTGCTTTGTTGGAGGTTACTGAAAATTGTTCCAACGAGGTCAAATTAACAATAGAGGTTGTTTCAAATAACAAGAGTGCTGAAAAATTTGCACCCTCTGGGGCAGAAAATATTCCTACTGACTCACAAATTGTGTTTAGGACAAGGGAATCAGAAAAATCTGCTGAAAGTAACCACAATTCACACAATGTTTCTGACAGTTGTGAACTGAGATTTAAGACTGACTTTACTCAACCAAGCTATACTGAATATGTCGATGATTGTAGCTTGCATTCTAGACCTGATGGTGATAGTGCCTCTGTCGAAGCAGGTCTCACAACCAATGTCTTGATGCCCCTTGAATCACAGAATATTACTAAAGATTTGCCTGTTAATTGTGAAAACAGTTCTAGTGTTGTTAATGCGTCAAATGCTGCTGAAGCAAAATTATGTTATTCCAAAACAACTGATCTCCAGACACACAAAAATCCTAGAGATTGCCAATCCATCCTAGTATCTTCAGGTATATGTGAGATAATTGCAGACGGTGTCAATGAGAGGAATAAGGCATCCAAGGCAGCTGATGCCGATTTTCTTCCTGCTGATTTTGAAGTAATTCCCAGTGATAAGCTTGGCTCTCATTCTAGACCTAATTGTGATAGTGCCTCTTGCGAAGCAGGTCTCACAACCAATGACTTGATGCCGGCCCTTGAATCACAGAATATTACTAAAGATTTGCCTGTTAATTGTGAAAACAATTCTAGTGGTGTTAGCACGCATAATGCTGATGAATCAGAATTATGCTATTCCAATACAACTGCTCTCCAGACAAACACAAATGCTGGAGAATGCCAATCCATAGTAGTATCTTCAGGTGTTTGTGAAAAAATTGTAGATGGTGCCAATGAGAGGAATATAGCATCCAGTGAAGCTGATGCCGATTTCCTTCCTGTTGATATTGAAGTAATTCCAGATAGTCAGCCTAGCTCTCATTCTAGACAAGATGGCGATAGTGCCTCCGGCGAAGCAGGTCTCACAACTAACGTTTTGACACACCTTGAATCACAAAATATTAGCCCAGAGTTGCCTGTTAATTGTGAAAACAATTCTAGTGTTGTTAGTGCGCCAAATGGTGATGAAGTAGAATTGTGCTATTCCAAAACCACTGATCTCCAGACAAACCAAAATCCTGGAGATTGCCAATCCATAGTTTCATCAGGTGTTTGTGAGAAAATTTCTGATGGTGTCAATAAGAGAAATATAGCATCCAGTACAGTTGAAACTGAAATTAGTTTCCAACAATGA 4842 0.4112 MREGLRSRTRLGGEVSSEGVVHKRRVRVKNEGLVSGDEGLVAPTSSVEKNGEVECDAKEECVLDLNASASGNVDLAENGNNESCFRDEEGKIEAEADKKGTEGLIRKANCDLDLKLSVSGNAGLAENGNNGRCVRDEDSNVEVEADKKKTKGLTGKAECDLDLNLSVSRNVDLTENVNNESCVRDGNSNTEVEADAKGAEGLIERRVLRSRSKRGDDKISYNGGNDGVFSGSNGENGGFERRIKVKTEYEEVDEDLTDGNKNEKVKVKVGGQGKKLKRKRGRPPKTELKEKDQLVDKPQRKLGRPPKTELKENNQLLDQPLRKRGRRPKTEIKEKDWLVDQSPRKRGRRPKTDQQKHLMTVGHNSKGKASLQEGKEVLTIRDGSRTNAVDNTCSRRSSGKELKEKGSSPLRKSKLRKVLKTEVDGMASPLRSNTLSTHAAKKGGMIEKKKLVRDQIMERLSAAGWTVDRRPRNGRNYIDAVYVGLDKSTHWSITLAYKRLKEHYEAGDGEGKMYKPGFEFIPIPEEDFNLLTRVVTKKRVSKKVKCVSFGGKGGKRVDGVNGKKKKRKPGSGAGMGKPVKGKMKRKRSLPGEGNTNVTLPNRLPVLARDHKRHKTHKKTRCALLVRDAMEEVDSEINGYVPYSGKRTVLAWMIDLGTIPQNGKVHYMQDRSESPLLEGKITGDGILCGCCNKITTISDFEAHAGSKQSDPLKNIYTDEETSLLQCLLDSWNKQDESERNSFHFVDVAGEDPNDDTCGVCGDGGDLICCDSCPSTFHKSCLDTKKFPSGDWHCIYCCCKFCGLVGGSSNQSVANDDFTMPALLTCHLCEEKFHISCIEANGGKTDDIREALSCGNKCQELSERLEMLLGVKHDIEDGFSWSFIRRSDAGFDASQTKPRMIECNSKLAVALSIMNECFMPFIDHRSGTNLFRSILYSCGSNFKRLNYSGFITATLERGDEIICVASIRIHGSQLAEMPFIGTRYMYRRQGMCRRLLNAIERALSSLHVELLVIPAISELRETWTSVFGFEPLDQISKQITKSMNLLVFPHVDLLQKKISRLKIANESLLLTGVSDHKKTHLDESDSSGSDCCKKNEKAISIESDCGHFVNSLNNAPGITSNTIQNSKSPTDVTCQAVCQTVHENLVVDNKSTVNAPDYVDNSCCQEDKERRCLSMPCINTGGSEGNYVGALLEVTENCSNEVKLTIEVVSNNKSAEKFAPSGAENIPTDSQIVFRTRESEKSAESNHNSHNVSDSCELRFKTDFTQPSYTEYVDDCSLHSRPDGDSASVEAGLTTNVLMPLESQNITKDLPVNCENSSSVVNASNAAEAKLCYSKTTDLQTHKNPRDCQSILVSSGICEIIADGVNERNKASKAADADFLPADFEVIPSDKLGSHSRPNCDSASCEAGLTTNDLMPALESQNITKDLPVNCENNSSGVSTHNADESELCYSNTTALQTNTNAGECQSIVVSSGVCEKIVDGANERNIASSEADADFLPVDIEVIPDSQPSSHSRQDGDSASGEAGLTTNVLTHLESQNISPELPVNCENNSSVVSAPNGDEVELCYSKTTDLQTNQNPGDCQSIVSSGVCEKISDGVNKRNIASSTVETEISFQQ 1613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00188 1613 MobiDBLite consensus disorder prediction 209 412 - -
Car04g00188 1613 MobiDBLite consensus disorder prediction 316 356 - -
Car04g00188 1613 SMART PHD_3 755 796 IPR001965 -
Car04g00188 1613 SMART PHD_3 797 857 IPR001965 -
Car04g00188 1613 SUPERFAMILY FYVE/PHD zinc finger 748 801 IPR011011 -
Car04g00188 1613 MobiDBLite consensus disorder prediction 1502 1522 - -
Car04g00188 1613 ProSiteProfiles Zinc finger PHD-type profile. 753 798 IPR019787 -
Car04g00188 1613 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 9 1541 - -
Car04g00188 1613 MobiDBLite consensus disorder prediction 127 146 - -
Car04g00188 1613 MobiDBLite consensus disorder prediction 239 270 - -
Car04g00188 1613 MobiDBLite consensus disorder prediction 396 412 - -
Car04g00188 1613 PRINTS AT-hook-like domain signature 297 308 IPR017956 GO:0003677
Car04g00188 1613 PRINTS AT-hook-like domain signature 341 351 IPR017956 GO:0003677
Car04g00188 1613 PRINTS AT-hook-like domain signature 277 287 IPR017956 GO:0003677
Car04g00188 1613 MobiDBLite consensus disorder prediction 555 599 - -
Car04g00188 1613 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 745 815 IPR013083 -
Car04g00188 1613 MobiDBLite consensus disorder prediction 1504 1522 - -
Car04g00188 1613 SMART AT_hook_2 277 289 IPR017956 GO:0003677
Car04g00188 1613 SMART AT_hook_2 299 311 IPR017956 GO:0003677
Car04g00188 1613 SMART AT_hook_2 343 355 IPR017956 GO:0003677
Car04g00188 1613 PANTHER PHD FINGER PROTEIN 12 9 1541 IPR042163 GO:0003714|GO:0045892
Car04g00188 1613 MobiDBLite consensus disorder prediction 283 308 - -
Car04g00188 1613 Pfam Tify domain binding domain 678 727 IPR032308 -
Car04g00188 1613 MobiDBLite consensus disorder prediction 131 146 - -
Car04g00188 1613 CDD NAT_SF 953 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00188 Car-Chr4 1925824 1938859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00188 275 1063 PHD Transcription Factor Family AT5G36670 39.927 9.41e-180 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00188 - - cam:101502634 3122.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00188 04 1925824 1938859 Car04g00188 04 1925824 1938859 ECH
Car03g02261 03 68599139 68604746 Car04g00188 04 1925824 1938859 PCT