Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00172 ATGGAGCAGTATGAAGTTCTACAACAGATTGGGAAGGGCTCTTTTGCTTCTGCTCTACTTGTAAGACACAAGCATGAAAACAAAAGGTATGTGCTCAAGAAGATCCGACTTGCCCGCCAGACCGACAGAATCCGTAGATCTGCTCATCAAGAGATGGAACTTATATCTAAAGTTTGTAATCCATTCATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATCGGCTATTGTGAAGGAGGGGATATGGCTGAAGCTATTAAAAAGGCTAATTGTATTCATTTTCCTGAAGAGAGGCTTTGCAAGTGGCTTGTTCAACTTTTGATGGCACTTGATTACTTGCATACAAATCATATTCTTCATCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGTGATGATCTTGCTTCATCGATTGTGGGAACTCCAAGTTATATGTGTCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGTTGCGTATATGAAATGGCTGCTCACAAACCAGCTTTTAAAGCTCTTGATATGCAAGCACTAATTAACAAAATAAACAAGTCTTTAGTGGCACCACTACCAACAATGTATTCTGGTACTTTTCGAGGCCTGGTGAAGAGTATGCTGCGGAAAAATCCCGAGCTTAGGCCAAGTGCTGCAGAGCTACTAAATCACCCACATCTTCAACCTTATATACTTAAAATTCACCAGAAACTAAATAACCCAAGAAGAAGTACTTTTCCATTCCAATGGACAGACTCAAACTATGCTAGGAGGAGTCGATTTGTAGAACGGGAATCTGTTTCTACTCCCTCTGGCAGAGTTAAACGATTGTCATTCAGTAATGATAGGGCCTTAAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTCTGTGTTCTACTCAAAGAGGACAAGGTTTCTCTACTTGTTCAAAAGAGAAACATTATGAACTATCCATTGGCCGTGTCCGTGAAAGACGGGATACTAACAAATCAAAAGACTCAATTGTTGATCGGATGCAAAGACTGAGAGAAACTAAGGAGTCTGCCACCCCGCGGCGACAGACACCACCATCAAAGATAGCGTATACTAGTTCCAAGCGTGATTCACTTCCAGCCTCTTCTACTCCAGCTGGTAAATTTACCCCATCATCTCGCAGAGCTTCCCTTCCACTTCCTACAAGATCCAAGGCCACAACTACCCCTTACAGAGCCAATGTCGGTCTTCTTCGAAGTGTGGACTCTCCTGATATTTCTGTTAATGCACCACGAATCGACAAGATTGCTGAATTCTCTTTGGCCACTGGTGAGGATCATCCTCTCTTCCCTATTCGTGGAACATCATCAACATCAGCTCAGTGCTCTTCTAGTTCCCCAAGGAATGCTGCTGACTACTCAATCACAAAGGACAAGTGTACAATCCAAGTTGTGGACAAAGCCAGTATTCCTACCAATAGTGCTCTAGTTTCATATCGCAATGAATGGTCTGAACATGGGACAACTACTGCTGTTTCAAGCCAATCATCTGCTGATTCTAATCAGCGCAAGTTTGACACCTCGTCTTACCAGCAACGCGCGCAGGCATTGGAAGGGCTGCTCGAGTTCAGTGCTCGGCTCCTACAACAACAGAGGTTTGAAGAGCTTGAGGTGTTGTTGAAGCCATTTGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCCATTTGGTTGACTAAGAGCTTTAAAGAAACTGTGGTCTAA 1827 0.428 MEQYEVLQQIGKGSFASALLVRHKHENKRYVLKKIRLARQTDRIRRSAHQEMELISKVCNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANCIHFPEERLCKWLVQLLMALDYLHTNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTMYSGTFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHQKLNNPRRSTFPFQWTDSNYARRSRFVERESVSTPSGRVKRLSFSNDRALNPSISGTEVGSLCSTQRGQGFSTCSKEKHYELSIGRVRERRDTNKSKDSIVDRMQRLRETKESATPRRQTPPSKIAYTSSKRDSLPASSTPAGKFTPSSRRASLPLPTRSKATTTPYRANVGLLRSVDSPDISVNAPRIDKIAEFSLATGEDHPLFPIRGTSSTSAQCSSSSPRNAADYSITKDKCTIQVVDKASIPTNSALVSYRNEWSEHGTTTAVSSQSSADSNQRKFDTSSYQQRAQALEGLLEFSARLLQQQRFEELEVLLKPFGPEKVSPRETAIWLTKSFKETVV 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00172 608 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00172 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Car04g00172 608 CDD STKc_Nek 3 258 - -
Car04g00172 608 MobiDBLite consensus disorder prediction 351 381 - -
Car04g00172 608 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00172 608 Gene3D Transferase(Phosphotransferase) domain 1 86 307 - -
Car04g00172 608 MobiDBLite consensus disorder prediction 315 336 - -
Car04g00172 608 MobiDBLite consensus disorder prediction 351 430 - -
Car04g00172 608 MobiDBLite consensus disorder prediction 530 549 - -
Car04g00172 608 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Car04g00172 608 PANTHER SERINE/THREONINE-KINASE NEK4 1 597 - -
Car04g00172 608 MobiDBLite consensus disorder prediction 382 430 - -
Car04g00172 608 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 597 - -
Car04g00172 608 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Car04g00172 608 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car04g00172 608 SUPERFAMILY Protein kinase-like (PK-like) 1 318 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00172 Car-Chr4 1765196 1769481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00172 10 259 MAP Kinase Kinase Kinase AT1G53570 30.980 1.61e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Car04g00172 Pkinase 9.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00172 K08857 - gmx:100810347 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00172 04 1765196 1769481 Car04g00172 04 1765196 1769481 ECH