Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00166 ATGAACTATGTTTACTCAGTGAAAGAAGAATACGTAGAACCTTTACCATTAAGAAATGAATACCTGCCAACGATTCCACCTCCGTTGCCAATGGAGGAACTTCATGAGATAGGACCCCCACCATTCCTCACCAAAACATTTGATGTGGTGGACGACACGACCACCAATCACATAGTTTCGTGGAGCAGAGGTGGCACCAGCTTTGTTGTTTCGGATCCACATAACTTCTCCAATCTTCTCCTTCCAAGATACTTCAAACACAATAACTTCTCAAGCTTTATCAGACAACTAAACACTTATGGTTTTAGAAAAATAGATTCAGATAGATGGGAGTTTGCAAATGAAGGATTCCTCAAAGGTCAGAGACATCTGTTGAAGAACATAAGGAGAAAGAAGACACCTTCTCACACTACTTCTTCCCAGCAAGGAAAGAGTCACAGTGTTGAAGTTAGTAGTTTTGAACTGGATGTAGAAATTAATCGTTTGAAGAAACAGAAGCAGGTATTGATGATGGAGCTTGTGAGTCTTAGACAGCAGCAATATAATACCACACTCTACCTTCTTGAGATGGAGCAAAAGTTACGAGGGATAGAAACCAAGCAGAAACAGATGATGTCATTCTTAGCTAGAGCTATGAAAAACCCTGCCTTTATCCACCAACTACTCCAACAAAAAGAGAAGAAAAAGGAGCTTGAAGAAACCATGGCCAAAAAGAGAAGGCTAGGTATTGGACAATCAAGCAGTGAAGGTGAAGAAAGAAGAAGCAGTGTTGTTAAAGTTGAGCCTTTAGAATTAAGTGATTATGAATTTGGGGTTTCAGAGATGGAAATGCTAGCTATGGAAATTCAAGTTTTTGGAAGGGGGGAGATGGATAAGGAGGAAATACCTGAGACACTAGAATCACAAGAGAGTAGGGATAGAGTACTTGATGACGAAGGGTTCTGGGAAGAACTAATGTTTAGTGTGAAATTTGAGGGTATATTTGGCCTACCGACTGCTGAAGATAAAAATGATTCAAGTGAACCATTGAATCAAGAATTCAGGATTAACTCTTTTCATTCAGTTTCTGCTGGTGCTGGGACAAGATTCTTTTATAGTAATAATTGTCATTATTTATCTCAAGATTACTCAGAAGATGTAGGATGA 1146 0.3918 MNYVYSVKEEYVEPLPLRNEYLPTIPPPLPMEELHEIGPPPFLTKTFDVVDDTTTNHIVSWSRGGTSFVVSDPHNFSNLLLPRYFKHNNFSSFIRQLNTYGFRKIDSDRWEFANEGFLKGQRHLLKNIRRKKTPSHTTSSQQGKSHSVEVSSFELDVEINRLKKQKQVLMMELVSLRQQQYNTTLYLLEMEQKLRGIETKQKQMMSFLARAMKNPAFIHQLLQQKEKKKELEETMAKKRRLGIGQSSSEGEERRSSVVKVEPLELSDYEFGVSEMEMLAMEIQVFGRGEMDKEEIPETLESQESRDRVLDDEGFWEELMFSVKFEGIFGLPTAEDKNDSSEPLNQEFRINSFHSVSAGAGTRFFYSNNCHYLSQDYSEDVG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00166 381 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 25 339 IPR027725 -
Car04g00166 381 Gene3D - 35 132 IPR036388 -
Car04g00166 381 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g00166 381 MobiDBLite consensus disorder prediction 233 256 - -
Car04g00166 381 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 25 339 - -
Car04g00166 381 Coils Coil 221 241 - -
Car04g00166 381 Pfam HSF-type DNA-binding 42 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g00166 381 SUPERFAMILY "Winged helix" DNA-binding domain 38 131 IPR036390 -
Car04g00166 381 Coils Coil 159 179 - -
Car04g00166 381 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g00166 381 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g00166 381 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Car04g00166 381 SMART hsfneu3 38 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00166 Car-Chr4 1697568 1699845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00166 24 319 HSF AT3G22830 49.398 2.95e-101 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Car04g00166 HSF_DNA-bind 3.1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00166 K09419 - gmx:100794264 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g02274 03 68748204 68754744 Car04g00166 04 1697568 1699845 PCT