Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00165 ATGTTCCCTTCAATTATATCCAATTCCACTTCTTTATCTGAAGACTCTTCTTCTACACAGCTTAATAGATCCAATCATGTTGTCTCAACCATTAATTCCTCACAACAGCCTCAGAAAACCAAGAAAAAAAGAAACCTCCCTGGAAATCCAGACCCTGATGCTGAAGTGATAGCTTTATCACCAAAGACTCTATTAGCTACGAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAAAGAGATCAAAACCTTCAACTTCATAGGAGAGGACATAACTTACCATGGAAGTTGAAGCAGAGGAACAACAAAGAAGTGATTAAAAAGAGAGCTTATGTTTGTCCAGAGCCTTCATGTGTTCATCACAACCCTTTAAGAGCTCTTGGAGATCTTACAGGAATTAAGAAACACTTTAGTAGAAAACATGGTGAGAAAAAGTGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCAGTCTGATTGGAAAGCTCACTCTAAAACATGTGGTACTAGAGAATACAAATGTGATTGTGGTACTCTATTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAGTGCAAGAATGACAGCAAACCAATTAATTAACAACAATACACAATCTCTATTCCTCTTCCCAACCCAACAAAACTTCCAAAACAATCTCACATGGGTCCCACCACCACCTCAACAAAATCTTAACCCTAACCCTAACCCTAACACCCTCAATGCTTCTCTCCACCACAACATCAAACATGAAACTCAAAACATTCACAACAACATCATAACCTCAGCAACTGCACTTCTCCAGAAAGCAGCAACAGTTGGGTCAGCCCCAATCACGGTGACTCAGCTTGACTCAGTGGTACGTCATCATTACGTTAACAACATGAGAGGCCTCACCAGAGACTTTCTTGGCCTAACCAACGGAGGAGGACAAAATGCTCCTTCCGTTGACGTTAGCATTCATCTCAAGGATATGCTAACATTCACGGCTGGTGTAGACCAACCAAACATGCTGTTTCCCGAGTCGTGGAATTGTTAG 1071 0.408 MFPSIISNSTSLSEDSSSTQLNRSNHVVSTINSSQQPQKTKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPLRALGDLTGIKKHFSRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMTANQLINNNTQSLFLFPTQQNFQNNLTWVPPPPQQNLNPNPNPNTLNASLHHNIKHETQNIHNNIITSATALLQKAATVGSAPITVTQLDSVVRHHYVNNMRGLTRDFLGLTNGGGQNAPSVDVSIHLKDMLTFTAGVDQPNMLFPESWNC 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00165 356 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Car04g00165 356 SMART c2h2final6 147 167 IPR013087 -
Car04g00165 356 SMART c2h2final6 112 142 IPR013087 -
Car04g00165 356 SMART c2h2final6 70 92 IPR013087 -
Car04g00165 356 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 14 264 - -
Car04g00165 356 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 14 264 - -
Car04g00165 356 Gene3D Classic Zinc Finger 127 205 - -
Car04g00165 356 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Car04g00165 356 Gene3D Classic Zinc Finger 49 118 - -
Car04g00165 356 Pfam Zinc finger, C2H2 type 70 92 IPR013087 -
Car04g00165 356 MobiDBLite consensus disorder prediction 1 43 - -
Car04g00165 356 MobiDBLite consensus disorder prediction 1 54 - -
Car04g00165 356 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00165 Car-Chr4 1681058 1683764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00165 27 346 IDZ Gene Family AT4G02670 53.352 1.98e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car04g00165 zf-C2H2 0.0033 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00165 K25870 - gmx:100812496 446.817