Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00152 ATGGAGAACTCAATGGGGAGACATGAAACCGAGATGAATTTTAAGGCTACGGAATTAAGGTTGGGATTACCCGGAGTCGATGAGATGGAGAAAGTTCCATCTAATTACTCTGTTCTTAGAAGCAACAAGAGATCTTCACCAGAAACAAGTGAGGTTGAGTCCATTAACAAGACCAATTTGAATACTTCTAATACCATATGTCATGACCAAGACAATGCTCCACCTTCAAATGGTGTATGCAGGGCACAAGTAGTGGGATGGCCACCAATAAGATCTTATAGAAAGAATAGCTTGCAACAAAAGAAAGGGGAAGAAGTTGGGATGTATGTGAAAGTGAGCATGGCTGGTGCACCTTATTTAAGGAAGATAGATCTAAAAGTTTACAAGAGTTACTCAGAACTCTTAAAGGCTTTGGAAAATATGTTCAAGTGTACATTTGGTGAATATTCAGAAAGAGAAGGATACAATGGATCTGAATTTGCTCCAACTTATGAAGACAAAGATGGTGATTGGATGCTTGTTGGAGATGTTCCTTGGGAAATGTTTATGTCCTCCTGCAAGAGGTTGAGAGTTATGAAAGGATCAGAAGCAAAGGGATTGGGTTGTTTTTGA 612 0.3938 MENSMGRHETEMNFKATELRLGLPGVDEMEKVPSNYSVLRSNKRSSPETSEVESINKTNLNTSNTICHDQDNAPPSNGVCRAQVVGWPPIRSYRKNSLQQKKGEEVGMYVKVSMAGAPYLRKIDLKVYKSYSELLKALENMFKCTFGEYSEREGYNGSEFAPTYEDKDGDWMLVGDVPWEMFMSSCKRLRVMKGSEAKGLGCF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00152 203 Pfam AUX/IAA family 17 201 IPR033389 -
Car04g00152 203 SUPERFAMILY CAD & PB1 domains 104 193 - -
Car04g00152 203 PANTHER AUXIN-INDUCED PROTEIN 1 201 - -
Car04g00152 203 Gene3D - 101 203 - -
Car04g00152 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 201 IPR003311 GO:0005634|GO:0006355
Car04g00152 203 ProSiteProfiles PB1 domain profile. 107 194 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00152 Car-Chr4 1528480 1530223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00152 34 200 B3 DNA Binding Superfamily AT2G46530 30.636 1.10e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Car04g00152 AUX_IAA 1.4e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00152 K14484 - gmx:100780752 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00152 04 1528480 1530223 Car04g00323 04 3332889 3334396 ECH
Car04g00152 04 1528480 1530223 Car04g00152 04 1528480 1530223 ECH
Car04g02664 04 51074569 51077177 Car04g00152 04 1528480 1530223 ECH
Car03g02289 03 68862180 68863769 Car04g00152 04 1528480 1530223 PCT