Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00147 ATGGTGAAGCTAAGACAATTGATAAAAAGGAGGGATGCGATTGTAAAGTATCTCTCTTGCAACCTTTGCAACCAATTTCTGATTGATGCCACCAAAATCATCGATTGCTTTCATACTTTTTGCAAGGAGTGTATTCATACTAAAATTAGAGAAGAAGACTTGGAATGTTGTCCAATATGCCACATCCATTTAGGGATGAATCCTTTTCAGAAAATGAGGCCTGACTTGAGTTTGCAAGACATAAGAAACAGGATATTTCCTGTGGGAAAAGAAAAGGAAGCACGTGAGTACCTCCCTGCAAATCTCTTAAAAGCTAGTGGCTACAATCCTCCTAATAATAATCATAATGTGCATGGTTCTACTTCTCAAAAAGGAAAAGCCAACAAAATTCTCAAAAATAAAAACAAGAGAATCAAAATTGATCAACAACAAGTTATTCATGTTGAAAAAGTGGTACCATCACCACCAAGAGCTAAGAAGGTTCCTAAAGAGGAAATATTTGGTGATTTAAGCATTTTACCTATGGCTTTCTTTTCTGAATCTGTTCATAAACCACTTGGCAAAGATGTTTGGTACTTCTGCTTGAGAGCTTCTCAAAATCAGAAAGGAGGTCCAGCCTTGCCTCAAATTACTTCATGTTATGCACAAATGAAGGATGGAAAGGTGCCTATATCTTATCTGCATAAATTTCTGAAGAAAAAGCTAAACCTCGAAAATGAAGATGAGGTTGAGATTTCATGTTTGGGTGTACCTGTGGACCCAACGACGCCTGCGGAAAAATTGGTAAAGATGTGGAAGAAAGCATCCGAAAAGAAGAAAAATGAAATTGAAGTTGGTAGTCTGAATATTGCTGTACTAAACTATGGTCGAAAGGTTCCATCCATGCATCATTGA 894 0.3714 MVKLRQLIKRRDAIVKYLSCNLCNQFLIDATKIIDCFHTFCKECIHTKIREEDLECCPICHIHLGMNPFQKMRPDLSLQDIRNRIFPVGKEKEAREYLPANLLKASGYNPPNNNHNVHGSTSQKGKANKILKNKNKRIKIDQQQVIHVEKVVPSPPRAKKVPKEEIFGDLSILPMAFFSESVHKPLGKDVWYFCLRASQNQKGGPALPQITSCYAQMKDGKVPISYLHKFLKKKLNLENEDEVEISCLGVPVDPTTPAEKLVKMWKKASEKKKNEIEVGSLNIAVLNYGRKVPSMHH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00147 297 SMART ring_2 20 60 IPR001841 -
Car04g00147 297 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Car04g00147 297 SUPERFAMILY RING/U-box 13 78 - -
Car04g00147 297 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Car04g00147 297 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 - -
Car04g00147 297 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 118 290 IPR044807 GO:0004842
Car04g00147 297 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 10 94 IPR044807 GO:0004842
Car04g00147 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 105 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00147 Car-Chr4 1464061 1468376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00147 10 93 C3H Transcription Factor Family AT2G30580 47.619 7.73e-26 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00147 K16277 K11488 twl:120007799 153.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00147 04 1464061 1468376 Car03g03057 03 75523966 75533045 ECH
Car04g00147 04 1464061 1468376 Car04g00320 04 3276774 3281163 ECH
Car04g00147 04 1464061 1468376 Car04g00147 04 1464061 1468376 ECH
Car03g02296 03 68933730 68940548 Car04g00147 04 1464061 1468376 PCT