Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00142 ATGGAAGAGATTGAACAAGCTAACAGAACAGCTGTTGAAAGCTGTCATAGAGTTCTTAGTATGTTGTCTCAACCAAGAGATCAAGTTCATCATAGGAATTTAATGTTGGAAACTGGTGAAGCTGTGAATAGGTTCAAGAAAGTTGTGTCTTTGCTTCATAATGGTTTGGGTCATGCAAGAGTTAGGAAGTTTAAAAAACATCAACAATTCCCTTTTTCTCAAACTCAAACTATCTTCTTAGATAACCCAATTTGCAAAACCAACACCAAAAATCTTCACTTCCCCCAAACTAACTACCCTCTTGAGAATTCATCAAATCCGGAACTTGCCTTAACCATAAGAAATCCACTTTCTCTTGGAAACTCGTCGTTGGAATTGAGTACTAATGGGAAAAGTCCTCTTCACCTTGCTCAACAAGCTGCATCGAATCACTATCActtcattcaacagcaacaacaacaaaggttgttgttgcagcaacagcagcagcaacaacaaatgaagcatcaagcagaaatgatgttccgaAGGTCTACTAGCGGAATAAACCTGAATTTCGACAATACTAGCTGCACACCGACAATGTCATCTACTAGGTCTTTCATTTCTTCCTTGAGCATAGATGGAAGTGTGGCTAATTTAGATGGAAGTTCTTTCCATTTAATAGGAGCTCCGCACTCTTCGGATCAGAATTCGCAACAGCACAAGAGAAAGTGTTCTGCTAGAGGTGATGAGGGAAGCTTGAAATGTGGAAGCAGTTCTAAATGCCATTGTTCAAAGAAGAGGAAACATAGAGTGAAGAGATCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCAGATATCCCTCCTGATGATTATTCGTGGAGGAAGTACGGGCAGAAGCCAATCAAGGGCTCTCCTCACCCTAGgggatattataagtgtagcagcatgagaggctgccctgctaggaagcatgttgagaggtgcttggaggagcctacaatgttaattgttacctatgaaggcgaacacaaccatcccAAACTACCAACACAACCTGCGAATGCATGA 1056 0.3267 MEEIEQANRTAVESCHRVLSMLSQPRDQVHHRNLMLETGEAVNRFKKVVSLLHNGLGHARVRKFKKHQQFPFSQTQTIFLDNPICKTNTKNLHFPQTNYPLENSSNPELALTIRNPLSLGNSSLELSTNGKSPLHLAQQAASNHYHFIQQQQQQRLLLQQQQQQQQMKHQAEMMFRRSTSGINLNFDNTSCTPTMSSTRSFISSLSIDGSVANLDGSSFHLIGAPHSSDQNSQQHKRKCSARGDEGSLKCGSSSKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKLPTQPANA 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00142 351 SMART WRKY_cls 283 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g00142 351 MobiDBLite consensus disorder prediction 222 246 - -
Car04g00142 351 ProSiteProfiles WRKY domain profile. 278 344 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g00142 351 Pfam WRKY DNA -binding domain 285 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car04g00142 351 Pfam Plant zinc cluster domain 236 281 IPR018872 -
Car04g00142 351 Gene3D WRKY domain 268 345 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car04g00142 351 SUPERFAMILY WRKY DNA-binding domain 281 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car04g00142 351 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 350 IPR044810 GO:0003700
Car04g00142 351 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00142 Car-Chr4 1413454 1416366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00142 1 347 WRKY Transcription Factor Family AT2G30590 57.180 2.86e-127 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car04g00142 WRKY 4.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00142 - - gmx:100170681 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00142 04 1413454 1416366 Car04g00142 04 1413454 1416366 ECH