Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00140 ATGGCAACAGAAGAGCCAATTGTTGCTGCAGCACCCGAACCAGCCACCGTCGAATCACCAGCTAAGGAGATTGAGGAACCAAAATCCGAATCGCAGAAGGTGAAGAAAGCCAAGGAAACCAAACCTAAGAAAACTTCCAAACCACGAAACCCTACTTCACATCCCACTTACGAAGAGATGATTAAGGATGCAATTGTGAGTTTAAAGGAGAAGACAGGTTCAAGCCAATACGCTATTGCAAAATTCATCGAAGAGAAATATAAACAGCTTCCTCCGAATTTCAAGAAGCTATTGCTTCACAATTTGAAGAAGAATGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAGGTTCATTCAAGCTTTCTCCGGCAATGAAGCCTTCAGTGACTACAACGAAGAAGAAGGCCGTAGCGGAAAAGCCCAAGCCCAAGCCGAAACCATCTGCCAAGGTTAAGGCAGTGAAATCAAAGACTGCCGAGAAGCCGAAGTCTAAATCTGTTACTGCGAAGCCAAAGTCCAAGCCTGCTGCGAAGCCCAAGCCTGCTGATGTGAAGCCCAAGTCTGCCGCTGCTAAGCCCAAGTCTGCTGCTGCTAAGCCCAAAGTTGCTGCCAAGGTGAAAGCAGCTGTGAAACCGAAGGAGAAACCCGTGAAGGCCGCAAGGACGTCGACTAGAACAACACCGGGGAAGAAAGTTGCTGCAGCACCTAAGAAAGCTGTGGCAGCTAAGAAAGCTCCTGTGAAGGCTAAAAGTGTAAAATCTCCGGTGAAGAAAGTATTGACGAAGAGAGGGGGAAAGAAATGA 801 0.4707 MATEEPIVAAAPEPATVESPAKEIEEPKSESQKVKKAKETKPKKTSKPRNPTSHPTYEEMIKDAIVSLKEKTGSSQYAIAKFIEEKYKQLPPNFKKLLLHNLKKNVASGKLVKVKGSFKLSPAMKPSVTTTKKKAVAEKPKPKPKPSAKVKAVKSKTAEKPKSKSVTAKPKSKPAAKPKPADVKPKSAAAKPKSAAAKPKVAAKVKAAVKPKEKPVKAARTSTRTTPGKKVAAAPKKAVAAKKAPVKAKSVKSPVKKVLTKRGGKK 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00140 266 MobiDBLite consensus disorder prediction 19 37 - -
Car04g00140 266 SUPERFAMILY "Winged helix" DNA-binding domain 48 126 IPR036390 -
Car04g00140 266 MobiDBLite consensus disorder prediction 1 57 - -
Car04g00140 266 Pfam linker histone H1 and H5 family 54 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00140 266 MobiDBLite consensus disorder prediction 115 266 - -
Car04g00140 266 MobiDBLite consensus disorder prediction 152 166 - -
Car04g00140 266 CDD H15 51 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00140 266 PRINTS Histone H5 signature 40 61 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car04g00140 266 PRINTS Histone H5 signature 67 84 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car04g00140 266 PRINTS Histone H5 signature 150 164 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car04g00140 266 PRINTS Histone H5 signature 181 198 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car04g00140 266 PRINTS Histone H5 signature 203 222 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Car04g00140 266 PANTHER HISTONE H1.1 2 266 - -
Car04g00140 266 SMART h15plus2 51 117 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00140 266 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 53 122 IPR005818 GO:0000786|GO:0003677|GO:0006334
Car04g00140 266 Gene3D - 48 144 IPR036388 -
Car04g00140 266 PANTHER HISTONE H1 2 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00140 Car-Chr4 1395842 1397026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00140 48 157 Single Myb Histone (SMH) Gene Family AT1G49950 31.304 3.04e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00140 K11275 - gmx:100795994 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00140 04 1395842 1397026 Car04g00140 04 1395842 1397026 ECH