Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00126 ATGTCTGGTTCTGTTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTATTAGAGGTTGTGTATTTGCACCTTATTTTTGTCATGAACAAGGTGCTACACATTTTGCAGCCATTCATAAAGTGTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCATCTCCCTCTAACTGATCGATGCGAAGCCGCTGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGCTGTGTTTCCCATATTTTTGCCCTCCAACAACAGGTGGTGAATTTACAAACACAGCTAGCTTATCTGAAAGAACAAGCAGAAGCACAGACTTGTCTCCTCAATAATGAAAAATCTACATCTCTTAATCTCCCACAACAAGATCTTCAAGGTTGGTTCCAGATGCAAAATTCCAATAATTACCAGCTTGGACAAGAATTTCTTACCAATAACTTGTCTAACATTTCATCAGCAACACAATATTATGGAAACAATACTCTCATGAATGTAGACCCTACAAGGAATTATGAAAATTCAGGAATCATAGAAGAAAACAGTTCATTTTCTAGCTTTGAGGAAAGTACTTCAAATTCTATGTCCTATGACATGCAAACAAACAGGAGGACATGGGGATTTGATGAAGTTGAGGATCTACATTCAGTGGCTTTTGGATACAGCTGA 690 0.3826 MSGSVSGSPCGACKFLRRKCIRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPLTDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQLAYLKEQAEAQTCLLNNEKSTSLNLPQQDLQGWFQMQNSNNYQLGQEFLTNNLSNISSATQYYGNNTLMNVDPTRNYENSGIIEENSSFSSFEESTSNSMSYDMQTNRRTWGFDEVEDLHSVAFGYS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00126 229 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 5 228 - -
Car04g00126 229 Coils Coil 89 109 - -
Car04g00126 229 Pfam Lateral organ boundaries (LOB) domain 9 107 IPR004883 -
Car04g00126 229 ProSiteProfiles LOB domain profile. 8 110 IPR004883 -
Car04g00126 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00126 Car-Chr4 1257187 1258613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00126 9 228 AS2 family AT3G58190 49.774 5.55e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Car04g00126 LOB 3.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00126 K13945 - gmx:100805623 300.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00126 04 1257187 1258613 Car04g00126 04 1257187 1258613 ECH
Car03g02306 03 69054576 69056203 Car04g00126 04 1257187 1258613 PCT