Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00121 ATGAGAAATTCCTCTGAGATAGCGTCTCCATCTTCAAACAAAATCAGATCGAAGAAACCCATTCTTCGAAGCTCAAAATCCCAATCCAAAGATTCATATGAACTAAGCACAAAGACTCCTGAGAAGCCATCACAGCGCACGCGCAACCGTGGCGTCGCTCTCTCTTTATCGGATATTCGAAAAGTCGCTAAGGGTTTGCAAGATCAGAAACAAAGCCATGAAACGACGTCGTTTTCAAAGGCTAAAACCGCTAGAAGGCAAATCGAAATGGCTTCTCCGCGTAAAACAAACATTTCTGTTGATGAATCGTTAAAGCTCCCCAAAAAGTATGAGAATTTGGGCGAGTTTTTTGATAGTTTGGATAGTTCCATCCGATTGTTGCGATTAAAAGGATCAATGACGTCGTTCACTAATATCAGACCCAAGATCGAAACTTTAACTGACAGGAGGTTTACACACAGTCATTTGGCTCAGTTGAAATTTATCTTACCTGAAGCAATTGATATTAAGAAATTATTAGTGTTTGACGAACGAACAAGTTGTATGAAGCCAGATCTTCATGTTTCTGTAAACCCTGATGCGGTAGTGTTTGACGCTGAGTTGAAACCGGAATGTGGGAGTATGTCTTTGAGGAAGTTATTTCGTGTACGGCTTAAAGATTTTTGGGAATCTCATCCAGAGGGAGATGAAATTCCGGAGGAAATGCTGCCTGAGCCATTCAGTCGCCCAAAACAAGATCCTATTTTGCACGTGTTGAAAACTCCCTTCTCCTCATTATCTGCAGTGACATTATCTGATCCATGTGTTGCTCATCCTCCAACAATGTTGTCAACGAGCCCACATAATAGTGACACTGCATATAATATGTCTATGCCTATTGACCAGCAGCCAGCTGTTGCTTCTCATATGTCTCAATCTTTTAGCAGACGGTTTTCTCAGAGAGTAAAGCAAAATTCCTGCCAATCTTTATCTGTGCTGGTTTCAGAGTCAAGCTTGAAGATTAATTCTACTTCTGAAGTCACTGAATCCAATCCTAATACATCCCCATCTGAGTTGGTTTTAGAAGCATCCAGTAGTGAAACATGTCCTACAATTCACACTTCTTCTAAATGCTTGACACCATCCCGTGTTACACCAGCTACACCCAGCAAATCCATTGAGTATATTGAGAGCAAAGATGGATCTGTCAAAAGCATTGATGCCATGTCAACTCCATctaaatttgtctctactccatctaaatttgtctctactCCATCCAGGCTGATGTCAGCAACACCTGCATTAAAGCCACCTAAAAGGCATATTATGAGTCCTGATGACAACTCTACCAGCTCCCCAAACAAGTTGGTTAAGCGCCCACATCGGTCAAGGTCATTGAAATTCGACACTCCAGTGAAAAATGAAAATGATGCCAGTGGCTTGTCAATTAATGACGACATTTTTGATATCCTCCCAGATAATCTTCTCCATTCGATAAGGGAGAAAGAACGAATAGCAATGGAGGAAAGGGATCCAGCTATCTCACAAGCTAAGAAACGGAAAAAAATTATTGCCAGCCTCCCTAAGCTCTTTAACATGATTCACATGTTGTTTCATTCAAGAAACCGATCTGTTATCACAAAAAGGGAGCTGTTAAGCGAGATAATCTCAAGCCACTGTGACATCGTTGATAGAAGCGAAGTTGAAGAACAGTTGCATTTATTGCTAGAATTAGTGCCCGAATGGATTTCTGAGAAGTCAGCCTCCAGTGGAGATATGCTAGTGTGTGTAAATAAAACGTTGAACCTCGAATCCTTAAGAGCATCACTTGAAGAAGCAAAATGA 1827 0.4039 MRNSSEIASPSSNKIRSKKPILRSSKSQSKDSYELSTKTPEKPSQRTRNRGVALSLSDIRKVAKGLQDQKQSHETTSFSKAKTARRQIEMASPRKTNISVDESLKLPKKYENLGEFFDSLDSSIRLLRLKGSMTSFTNIRPKIETLTDRRFTHSHLAQLKFILPEAIDIKKLLVFDERTSCMKPDLHVSVNPDAVVFDAELKPECGSMSLRKLFRVRLKDFWESHPEGDEIPEEMLPEPFSRPKQDPILHVLKTPFSSLSAVTLSDPCVAHPPTMLSTSPHNSDTAYNMSMPIDQQPAVASHMSQSFSRRFSQRVKQNSCQSLSVLVSESSLKINSTSEVTESNPNTSPSELVLEASSSETCPTIHTSSKCLTPSRVTPATPSKSIEYIESKDGSVKSIDAMSTPSKFVSTPSKFVSTPSRLMSATPALKPPKRHIMSPDDNSTSSPNKLVKRPHRSRSLKFDTPVKNENDASGLSINDDIFDILPDNLLHSIREKERIAMEERDPAISQAKKRKKIIASLPKLFNMIHMLFHSRNRSVITKRELLSEIISSHCDIVDRSEVEEQLHLLLELVPEWISEKSASSGDMLVCVNKTLNLESLRASLEEAK 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00121 608 Pfam DNA replication factor Cdt1 C-terminal domain 488 581 IPR032054 -
Car04g00121 608 MobiDBLite consensus disorder prediction 69 83 - -
Car04g00121 608 SUPERFAMILY "Winged helix" DNA-binding domain 96 240 IPR036390 -
Car04g00121 608 PANTHER DNA REPLICATION FACTOR CDT1 18 608 IPR045173 GO:0003677|GO:0030174|GO:0071163
Car04g00121 608 SMART CDT1_2 106 238 IPR014939 -
Car04g00121 608 Pfam DNA replication factor CDT1 like 106 192 IPR014939 -
Car04g00121 608 MobiDBLite consensus disorder prediction 1 18 - -
Car04g00121 608 Gene3D - 478 608 IPR038090 -
Car04g00121 608 MobiDBLite consensus disorder prediction 408 456 - -
Car04g00121 608 MobiDBLite consensus disorder prediction 408 424 - -
Car04g00121 608 CDD Cdt1_m 92 239 IPR014939 -
Car04g00121 608 CDD Cdt1_c 484 605 IPR032054 -
Car04g00121 608 Coils Coil 590 608 - -
Car04g00121 608 MobiDBLite consensus disorder prediction 1 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00121 Car-Chr4 1203079 1206498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00121 403 606 Core DNA Replication Machinery Family AT2G31270 50.685 4.82e-54 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00121 K10727 - gmx:100778818 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00121 04 1203079 1206498 Car04g00121 04 1203079 1206498 ECH