Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00118 ATGGCACTAAACAAGTTCTACAAGCTTGGATATCAAGCTCTCCCACCTATCATAACTCAGTCTACTACACTTCATCACCCTCCACAACCTGACTATGATTTTCCCATATTTGCCATTGTTGTTCTAAGCATCATGGCCACCATTTTGTTGCTCCTCATCTACTTCACTTTTTTAACCAAATTCTGCTCAAATTGGAATCAAGTTAACCCAAACAGATGGATATCGGTCCTGCGAGCTCGACAGAACGACGACGATGATCGCTTCATAGCATTGTCTCCTACCTCGTGGAACCGAGGACTAGACGAATCGGTCATCCGAGACATCCCAAGTTTTCAGTTCATAAAAGGAGAATGTGAAGATCAAACTGTGTTATATGGTTGTGTGGTTTGTTTGACAGAGTTTCAAGAACAGGATGTGCTGAAAATTCTCCCAAATTGTAACCATGCTTTTCACTTGGATTGCATTGATGTTTGGCTTCAAACCAATTCTAATTGTCCTCTTTGTAGATCAAGCATTTCAGGCAGCACAACAAACACTACATTTGATCATATCATAGCTCCAAGTTCTTCTCCTCAGAATTCTCAGTTAAACTCTAACATGGATAGTGATGAAGATTTTGTGGTCATTGAATTAGGTGGAGGAGAAAATGAGGTTCAACATGAAAGAAATTACTCAAGAGGAAGCTTAGCACATAGTAGAAGTCATTCTACTATGAAGAATGGAGAAATGAAACCAAGGAAGTGTCACCATGTTTCCATCATGGGAGATGAGTGTATTGATATAATCAGAAAGAAAGATGATTTGTTTTCTATTCAGCCGATTCGACGATCTTTCTCGATGGATTCGGCAAATGATAGACAAGTTTTCATGGATGTTCAAGCTTTTATTATACAACAACAAAATGGTCATAGCCAGAATGAGGCTAGTGCAAGTGAGGATTGTAATAGCAGAAGTAGAAGAGCATTCTTTCCATTTTGTTATGGAAAAGGATCCAAAAATGCAGTTCTTCCCTTTGGAGAATGA 1023 0.39 MALNKFYKLGYQALPPIITQSTTLHHPPQPDYDFPIFAIVVLSIMATILLLLIYFTFLTKFCSNWNQVNPNRWISVLRARQNDDDDRFIALSPTSWNRGLDESVIRDIPSFQFIKGECEDQTVLYGCVVCLTEFQEQDVLKILPNCNHAFHLDCIDVWLQTNSNCPLCRSSISGSTTNTTFDHIIAPSSSPQNSQLNSNMDSDEDFVVIELGGGENEVQHERNYSRGSLAHSRSHSTMKNGEMKPRKCHHVSIMGDECIDIIRKKDDLFSIQPIRRSFSMDSANDRQVFMDVQAFIIQQQNGHSQNEASASEDCNSRSRRAFFPFCYGKGSKNAVLPFGE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00118 340 PANTHER RING-H2 FINGER PROTEIN ATL16 3 338 IPR044600 GO:0016567|GO:0016740
Car04g00118 340 Pfam Ring finger domain 127 169 IPR001841 -
Car04g00118 340 MobiDBLite consensus disorder prediction 220 244 - -
Car04g00118 340 ProSiteProfiles Zinc finger RING-type profile. 127 169 IPR001841 -
Car04g00118 340 SUPERFAMILY RING/U-box 126 175 - -
Car04g00118 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 174 IPR013083 -
Car04g00118 340 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 338 - -
Car04g00118 340 CDD RING-H2_PA-TM-RING 127 169 - -
Car04g00118 340 SMART ring_2 127 168 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00118 Car-Chr4 1177526 1178795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00118 33 296 C3H Transcription Factor Family AT1G04360 43.919 6.74e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00118 K19041 - gmx:100809883 475.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00118 04 1177526 1178795 Car04g00118 04 1177526 1178795 ECH
Car04g00118 04 1177526 1178795 Car03g02311 03 69095924 69097214 PCT