Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00116 ATGAATGATATGGAATTAATGCTGCAAGAACCTTATGAAATTTCATTCGAATCATTAGGTATTAATGATCCTATTCAAGATTATCTTTCTTTCAACATGGTTGATTTCTCATCTAGTTCACAAACACCAACACAAATTGAACCAAAACAAGCTAAAGAGATTATTAACAAGGAAAAAACATATATAGGTGTAAGGAAAAGAGCTTGGGGGAAATTTGCTGCAGAAATAAGAGATACAACAAGAGGAGGAAAAAGGGTTTGGCTTGGAACATTTGATACTGAAGAGGAAGCTGCTTTAGCTTATGATCAAGCTGCATTTTCCATGAGAGGTAATAATGCTCTTCTCAATTTTCATGTCAAAAGGGTTAAACAATCTTTGAAAGATATTCAATATGATTGCTCTAATATTAATCATTCTTCTTCTTCACCTGCACTTGCACTCAAGGAGAGATATTATAACCGAAGAAAATTAATTTCATCATCAAAATCTAAAAAGGGTAAAGCAGGAATATTACAACAATCTAAGGGTTCATCAACAAGTAGTGTTTTGGTGTTAGAGGATTTGGGAGTTGAATATCTTGACCAACTTCTATCCATATATGATCATCAAACTACAAGTTTATGA 624 0.3269 MNDMELMLQEPYEISFESLGINDPIQDYLSFNMVDFSSSSQTPTQIEPKQAKEIINKEKTYIGVRKRAWGKFAAEIRDTTRGGKRVWLGTFDTEEEAALAYDQAAFSMRGNNALLNFHVKRVKQSLKDIQYDCSNINHSSSSPALALKERYYNRRKLISSSKSKKGKAGILQQSKGSSTSSVLVLEDLGVEYLDQLLSIYDHQTTSL 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00116 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 38 198 - -
Car04g00116 207 PANTHER DNA-BINDING DOMAIN 38 198 IPR044808 GO:0003700|GO:0009873
Car04g00116 207 CDD AP2 61 117 IPR001471 GO:0003700|GO:0006355
Car04g00116 207 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
Car04g00116 207 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Car04g00116 207 PRINTS Ethylene responsive element binding protein signature 84 100 IPR001471 GO:0003700|GO:0006355
Car04g00116 207 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Car04g00116 207 Pfam AP2 domain 61 110 IPR001471 GO:0003700|GO:0006355
Car04g00116 207 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Car04g00116 207 Gene3D AP2/ERF domain 59 120 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00116 Car-Chr4 1160880 1161503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00116 58 197 AP2-EREBP Transcription Factor Family AT3G23240 52.143 1.00e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g00116 AP2 3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00116 K14516 - gmx:100811486 213.001