Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00115 atggaaggaaatagtaatggaaaTGTAGAACAGGTTCGGTATAGAGGAATTCGTAGAAGACCATGGGGTAAATTTGCAGCAGAGATTCGTGACCCAACAAGAAAAGGGACAAGAATATGGCTTGGAACATTTGATACTGCCGAGGAAGCTGCACGTGCTTATGATGTTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTCTTAATTTCCCCAATGAGTATCAAGCTTCTAATTCGAATTCTAATTCATTACCTATGCCTATTACTCTGCCTCCTTCTCCTTCTCCTCCTTCTACTAATCCTAATCCTAATTCCACTTCCTCTAATTCATACTTTGTTGATGACAATTTTGATTTTGAATTTTTGGATGATAAGTTGCTTCAAGAACTCCTTCAAGATGGAAGCACCAATAGTCAGTAA 420 0.3667 MEGNSNGNVEQVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEEAARAYDVAAFHFRGHRAILNFPNEYQASNSNSNSLPMPITLPPSPSPPSTNPNPNSTSSNSYFVDDNFDFEFLDDKLLQELLQDGSTNSQ 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00115 139 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Car04g00115 139 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Car04g00115 139 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Car04g00115 139 PANTHER DNA-BINDING DOMAIN 6 81 IPR044808 GO:0003700|GO:0009873
Car04g00115 139 SUPERFAMILY DNA-binding domain 13 72 IPR016177 GO:0003677
Car04g00115 139 MobiDBLite consensus disorder prediction 74 111 - -
Car04g00115 139 Gene3D AP2/ERF domain 12 72 IPR036955 GO:0003700|GO:0006355
Car04g00115 139 ProSiteProfiles AP2/ERF domain profile. 13 71 IPR001471 GO:0003700|GO:0006355
Car04g00115 139 MobiDBLite consensus disorder prediction 87 101 - -
Car04g00115 139 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Car04g00115 139 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 6 81 - -
Car04g00115 139 Pfam AP2 domain 13 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00115 Car-Chr4 1149496 1150172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00115 10 131 AP2-EREBP Transcription Factor Family AT3G23230 59.016 1.76e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car04g00115 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00115 - - gmx:100779173 144.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00115 04 1149496 1150172 Car04g00115 04 1149496 1150172 ECH
Car03g02317 03 69116868 69117431 Car04g00115 04 1149496 1150172 PCT