Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00109 ATGCCGTCGCTACTCTCTCCGGGCAGAATCCACAAGCTAGAGATTGAAAATTTCAAGTCCTACAAGGGTTTCCAAGTCATCGGTCCCTTTCACGACTTCACCGCCATAATTGGCCCTAATGGAGCAGGAAAGTCCAACCTAATGGACGCAATCAGCTTCGTTCTCGGCGTTAGGACCGGCCAACTCCGTGGTGCGCAATTGAAAGATCTCATCTACGCTTTTGATGATAGAGACAAAGAGCAAAAAGGACGCAAAGCCTTTGTTCGTTTGGTTTATCAACTCGCTAACAACTCTGAGATCAAATTCACTAGAGCTATCACCTCTGCCGGAGCAAGTGAGTATCGCATCGACGATAGCATCGTTACTTGGGATGGTGATGTGGAGTCCATTGCGTCGAAAAATCCGAAGGAGCTTACTGGCCTTATTGAGCAGATATCTGGCTCTGATGAGCTCAAGAGAGACTACGAACAGTTTGAAGAAGAAAAAGGCGCTGCTGAGGAAAAATCTGCACTAGTTTTTCAGAAGAAAAAGACTGTGGTTATGGAGAGAaagcagaagaaagaacaaaaggaagaagcagagaaACATCTTCGCTTGCAAGACCAATTGAAATCTACAAAGAAGGAACATTTCTTGTGGCAGTTGTTCAATATAGAAAATGATATTGTTAAAACAACTGAGGAACTTGAAGATGATAAAAGAAGTCGCGAAGGTGTTATTGAAGAACTAGAAAATTTTGAACACGAAGCTAGCAAAAAGAAGAAAGAGCAAGCCAAATTTCTTAAAGAGATTGTGCTACGAGAAAAGAAAATAACTGACAAAAGCAACAAACTTGACAAATATCAACCTGAGCTTCTCAAGTTGAAGGAGGAAATGTCTCGTATTAATTTAAAAATTAAAAAAGGAAAGAAGGAACTTGGCAAAAAAAGGGAAGAACAAAGGAGGCATGCCAATGATATAGCAGGGTTACAGAGTGGTATTCAGGACCTTTCAGCAAAAATGGCAGAGCTCCAGGAAAAGGGTCGAAATGCGGGCGGTGATCAGCTTAAGTTAGATGGCAATGATTTGGAAGAATATTTTAGAATAAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGAGCGGAAAAAGAACTTCTAGATAGGCAGCAACATGCTGAAAGTGAAGCACAAAATAATTTGGAAGAAAATTTTCAACAATTAAAAACCCGGGAGTCTGAGCTAGATTCACAGGAAAAACAGATGCGAGAAAGGCTTGAAAAAATTCTTGATAATTCTGCAAAGAATAAGGATGCCGTTGAAAACCTAAAGACAGAATTGCGTGTGATGCAGGAAAAACATAGTGATTCCAAGAGAAAATATGATTACTTGAAGATAAGAATTGGTGAAATAGAAAATGATCTACGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGCTAAATTGTCTCAGGCAGTGGCGACTCTGAAACGCTTGTTTCAAGGAGTCCATGGTCGCATGACTGATCTTTGTAGGCCAACGCAGAAGAAATATAACCTAGCCGTTACTGTTGCCATGGGTAAATTAATGGATGCAGTTGTTGTTGAGGATGAAAAGACCGGGAAGGAATGCATCAAGTATTTAAAAGAGCAGAGGCTTCCTCCTCAGACATTTATTCCTCTACAATCTATTCGTGTGAAGCAAATAATGGAAAGGTTACGCTCATTAGGCGGTACAGCAAAACTGGTTTTTGATCGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTCTTTGCTGTTGGGAATACTCTTGTTTGTGAAGATCTTGAGGAAGCCAAAATTTTAAGCTGGAGTGGTGAGAGGTTTAAAGTTGTAACTGTGGACGGAATTCTGCTGACGAAATCTGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCGAGGTCAAAACAGTGGGATGACAAGAAATATGAAGCATCTGTTAAGAAGAAAGAGCAGTATGAATCGGAGTTGGAAGAGCTAGGATCAATAAGAGATATGCGCCTTAAAGAGTCTGAAGCAGAGGGAAAAATTAGCGGACTTGAGAAGAAAGTTCAATATGCGGAGATTGAAAAGCGAAGCATTGAAGACAAACTTTTAAATTTGAGCCATGAAAAGGAGACCATCAAAGAAGAAATTAAACGTATTAGTCCAGAACTGAAGAAGTTAAGAGATGCTGTTGAAAAGAGGAATGCGGAATTACGTAAGCTTGAAAAGAGGATAAATGAAATCACTGATCGGATATACAAAGACTTCAGCAAGTCAGTTGGGGTTGCAAACATTCGCGAGTATGAAGAAAATCAACTCAAGGATGCTCAAAATGTAGCAGAGGAGAGGCTAAACCTGAGTAGCCAACTTTCTAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAGTTCACGAATTCAAGAATTGGAATCTTCTGTAAGTGCTTTAGAGAATGATTTAAAACGGGTACAAAACAAAGAGGCTGAAGCAAAGTTAGCAGCGGAGAATGCTACTGAAGAGATAAATCAGTTGAAGGATGAAGCTAAAGAGTGGAAATCAAAGTCAGAGGATTGTGAAAAGGAAATCCAGGAATGGAAGAAGAGGGCTTCTGCAGCCACAACAAACTTATCAAAACTTAATCGTCTGATAAACTCAAAGGAGGCACAGATTGAGCAGTTAATTGGGCAAAAGCAAGAAATAATAGAGAAGTGTGAACTAGAGCAGATTAGTCTTCCAATCATATCAGATCCTATGGATACTGGTAGCTCAACACCAGGCCCAGTTTTTGACTTTGATAAGCTCAGTAGGACACTAAAAGATAGGAGGCACTCTGACAGGGATAAAATAGAGGTAGACTTTAAGCAAAAAATGGATGCATTGATGTCAGAGATTGAAAGAACAGCCCCAAATTTGAAGGCATTGGACCAGTATGAGGCTCTGCTTGAAAAAGAAAGAGCTGTAACTGAAGAGGCTGAAGCTGTCAGGAAGGAAGAGAAGGAAAAAGCAGATAGATTCAACGCAGTTAAGCAGAAGAGATATGATTTGTTCATGGATGCTTTCAACCATATATCTGATAATATAGATAAAATTTACAAACAACTTACAAAGAGCAACACACATCCTCTGGGTGGGACAGCATACCTAAATTTAGAAAATGAAGACGATCCATTTCTACATGGCATCAAGTACACTGCTATGCCGCCAACAAAGCGGTTTCGCGATATGGAACAACTATCTGGTGGTGAAAAGACTGTTGCCGCGCTTGCGTTGCTATTCTCTATCCATAGGTAG 3315 0.3988 MPSLLSPGRIHKLEIENFKSYKGFQVIGPFHDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDRDKEQKGRKAFVRLVYQLANNSEIKFTRAITSAGASEYRIDDSIVTWDGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKGAAEEKSALVFQKKKTVVMERKQKKEQKEEAEKHLRLQDQLKSTKKEHFLWQLFNIENDIVKTTEELEDDKRSREGVIEELENFEHEASKKKKEQAKFLKEIVLREKKITDKSNKLDKYQPELLKLKEEMSRINLKIKKGKKELGKKREEQRRHANDIAGLQSGIQDLSAKMAELQEKGRNAGGDQLKLDGNDLEEYFRIKEEAGMKTAKLRAEKELLDRQQHAESEAQNNLEENFQQLKTRESELDSQEKQMRERLEKILDNSAKNKDAVENLKTELRVMQEKHSDSKRKYDYLKIRIGEIENDLRELKADRYENERDAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKQIMERLRSLGGTAKLVFDRKFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKYEASVKKKEQYESELEELGSIRDMRLKESEAEGKISGLEKKVQYAEIEKRSIEDKLLNLSHEKETIKEEIKRISPELKKLRDAVEKRNAELRKLEKRINEITDRIYKDFSKSVGVANIREYEENQLKDAQNVAEERLNLSSQLSKLKYQLEYEQNRDMSSRIQELESSVSALENDLKRVQNKEAEAKLAAENATEEINQLKDEAKEWKSKSEDCEKEIQEWKKRASAATTNLSKLNRLINSKEAQIEQLIGQKQEIIEKCELEQISLPIISDPMDTGSSTPGPVFDFDKLSRTLKDRRHSDRDKIEVDFKQKMDALMSEIERTAPNLKALDQYEALLEKERAVTEEAEAVRKEEKEKADRFNAVKQKRYDLFMDAFNHISDNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHR 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00109 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 250 IPR027417 -
Car04g00109 1104 Coils Coil 373 414 - -
Car04g00109 1104 SMART SMC_hinge_2 496 611 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Car04g00109 1104 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1103 - -
Car04g00109 1104 Coils Coil 416 474 - -
Car04g00109 1104 Coils Coil 673 721 - -
Car04g00109 1104 Gene3D - 9 174 IPR027417 -
Car04g00109 1104 Gene3D - 474 556 - -
Car04g00109 1104 Coils Coil 229 263 - -
Car04g00109 1104 Coils Coil 982 1009 - -
Car04g00109 1104 Gene3D - 557 638 - -
Car04g00109 1104 Coils Coil 176 209 - -
Car04g00109 1104 SUPERFAMILY Smc hinge domain 460 656 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Car04g00109 1104 Gene3D - 922 1104 IPR027417 -
Car04g00109 1104 Coils Coil 148 168 - -
Car04g00109 1104 Coils Coil 807 911 - -
Car04g00109 1104 PIRSF SMC 8 1104 IPR024704 GO:0005524|GO:0016887
Car04g00109 1104 Coils Coil 285 305 - -
Car04g00109 1104 Pfam SMC proteins Flexible Hinge Domain 496 610 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Car04g00109 1104 Pfam RecF/RecN/SMC N terminal domain 10 127 IPR003395 -
Car04g00109 1104 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 1101 IPR027417 -
Car04g00109 1104 Coils Coil 729 756 - -
Car04g00109 1104 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1103 - -
Car04g00109 1104 Coils Coil 320 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00109 Car-Chr4 1105155 1121900 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00109 7 56 Structural Maintenance of Chromosomes family AT5G15920 42.000 2.62e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00109 K06636 - gmx:100791953 1716.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00109 04 1105155 1121900 Car04g00109 04 1105155 1121900 ECH