Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00108 ATGCCTGCCGGTCATGGTTTGCGATCTCGCACCAGAGATTCATTCTCTCGCCCATTCCGTAAGAAGGGAACCATTGCCCTAACCACCTACCTCAGGACTTATCATATCGGTGACTATGTTGACATTAGGGTTAACGGTGCCGTTCACAAAGGTATGCCTCATAAATTCTACCATGGACGTACCGGACGTGTCTGGAATGTCACCAAACGCGCCATTGGAGTCGAAGTTAACAAGCAGGTTAGGAACAAGATTTTGAGAAAGAGGATTCATGTTCGGGTGGAACATGTTATGCCTTCCAGGTGCACCGAGGAGTTCCGATTGAGGAAGATCAAGAATGATCAACTGaaggctgaggccaaggccaagggagaggtcataagcacaaagcgcaagccagaggGTCCCAAACCTGGTTTCAAGGTAGAAGGTGCTACCTTGGAGACAGTTACTCCAATACCATATGATGTTGTTAATGATCTCAAAGGAGGATACTAG 495 0.4141 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFKVEGATLETVTPIPYDVVNDLKGGY 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00108 164 Gene3D - 99 156 - -
Car04g00108 164 MobiDBLite consensus disorder prediction 121 141 - -
Car04g00108 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 164 IPR001147 GO:0003735|GO:0005840|GO:0006412
Car04g00108 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Car04g00108 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Car04g00108 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Car04g00108 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Car04g00108 164 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 164 - -
Car04g00108 164 MobiDBLite consensus disorder prediction 121 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00108 Car-Chr4 1100569 1102396 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00108 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 80.488 8.69e-101 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00108 K02889 - gmx:100305629 324.324