Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car04g00105 ATGCATATAGGTCAAACGGATACAGCTTCAGTAAAATGTCTGATCAACAGCATTTCTCGATTCATTCTTCTGGTTTCTTGCCAAACAGTGAAACCTATGCCCTTCCAAAAGATTTGTAATAATATGGTTGAGGTGTTAAAGCGTTTGAAGCCAGTGCTTGATGACGTTATGGATTACAATATATCTTCACATGAAAATTTATGTAAAGTATGTGAAGAGTTGGATATACGGGTTAATGAAGCAAGGGATTTCATTGAAAATTGGGGTCCAAAGAAGAGCAAGATTCATAGTGTTCTACAAAGTGGTACATTGTTGATCAAGTTACAAAGCACTTCACTGGACATTTGTCACATGATAGTTAAATCCTTACAGTCACCTCCATCTGCATCAGTTTTGGCTAACCTCCAGCACTATATCCAAGAACTTCAGTGTCTCAAGAAGGAAACGGCGATGGTCTATATAGAAAAGGCACTGAGAAACCAAAGAGATAATATTGAACCTAGCTACGAGCATCTAAAGGAAATTATTGAGTTACTTAAACTGGCATCAAACCAGGAGCTCTTGAAAGAAAGTATTGCTGTGGAGAAGGAAAGATTGAACATGGAAGGGCATAAAATGATAGGGGAGTTGGAAGAAATCAATGAAATTGTGAATCTTGTCCGCAACATATGTGATTATGTGGTGAAAACTGAGTGCTTTTCTGTCAAAAGTGGAGTCTCCCTTCCTCCATATTTTCGTTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATCGTGGCTTCGGGTCAAACGTATGAGAGGCAGTCCATCCAAAAGTGGCTTGATCATGGACTGACAGTTTGTCCGAAGACTCGTCAAAGACTTACTCACACGAATCTCATTCCCAATTATACAGTCAAAGCTATGATATCAACTTGGTGTGAGGAAAATAACACTGACCATTCGGGTAACTCTGAACACAGTAATTCTGCCGATATCACAACTCCCTCTGATCACTTATTGTCTCAAGAATTAGCTCGAGCATGTGGTTTCGGGTCTGCACCCAGTGGCAGTTCAATTTCAAGACCATCTCTTCAAACTGGAAACGCATTCGAAAAACAAAAGGGTGACAACTCGTTCAGATCAAATGGAGAATGCAATGGATGGCAGAATGCAGCTATAGAAAAGTGGGAGCTACAATCTCCATATAATCACAGCAGAAGTGAATCGTTTTCAAGTTCAATCTCTAGTAGTGATTGTCTACTTGTTGCAGTTTCAAATAACGTGTTGAAGATATCCAATAAGCATCAAAATGCGAAGGTGTTGTCTGGTGAAATCACAAATGTGTGTCCTGCTTCTCCTTGGTTATCCGGAAAACAATTTCACACCCCTGGACCAGATGCCATGCAAAATGGAAAAAATGGCAAAAGTGAGACTAGTATTAGTCATTCAAGTGTTGATTCTCGTCTTGTTTCGAACTTGGGATTGGATGAATTGACAGCCTCATCTCATGTCAATAAATTGATCGAAGACCTTCGAAGCCAATCAATTGAAGTGCAAACTACGGCTGCAGAAGAATTGCGGCTCCTTACAAAGCATAACACGGAAAACCGTATCATTGTAGGACAATGTGGGGCTGTCAAGCCTTTACTTTCGTTGCTATATTCAGACGGGAACCTAACGCAAGAGCATGCCGTTACAGCTCTGCTGAATTTGTCAATTAACGAAGACAACAAGGCCTTGATTATGGAAGCAGGAGCTATAGATCCCCTTATCCATGTTTTAAAGACAGGAAATGATGGAGCCAAGGAGAATTCTGCGGCAGCTCTATTCAGCCTCTCTGTACTAGAGAACAGTAAAGCAAAAATCGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGATCTTCTTGCCTCAGGAACACTTAGAGGAAAGAAAGACGCTGCTACTGCTTTATATAACCTCTCAATATTTCACGAAAATAAAGCTCGTATAGTTCAAGCTGGAGCTGTGAAGTTTCTGGTTCAGATGATGGATCCTGATGATGGAATGGTTGACAAGGCCATTGCTCTTCTGTCAAACCTGTCGACAATTGCAGAGGGAAGGTTAGAAATTGCAAGAGAAGGGGGAATCCCCTTACTAGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCTATCCTCTTGCAATTATGCCTTCATAGTTCAAGGTTTTGTACACTGGTTTTACAAGAAGGAGCTGTACCTCCCTTAGTTGCATTATCTCAATCTGGTACGCTGAGAGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAGCGAGAAGGAGCTACCGGGAAGGGAAAATCATGA 2355 0.4106 MHIGQTDTASVKCLINSISRFILLVSCQTVKPMPFQKICNNMVEVLKRLKPVLDDVMDYNISSHENLCKVCEELDIRVNEARDFIENWGPKKSKIHSVLQSGTLLIKLQSTSLDICHMIVKSLQSPPSASVLANLQHYIQELQCLKKETAMVYIEKALRNQRDNIEPSYEHLKEIIELLKLASNQELLKESIAVEKERLNMEGHKMIGELEEINEIVNLVRNICDYVVKTECFSVKSGVSLPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLTHTNLIPNYTVKAMISTWCEENNTDHSGNSEHSNSADITTPSDHLLSQELARACGFGSAPSGSSISRPSLQTGNAFEKQKGDNSFRSNGECNGWQNAAIEKWELQSPYNHSRSESFSSSISSSDCLLVAVSNNVLKISNKHQNAKVLSGEITNVCPASPWLSGKQFHTPGPDAMQNGKNGKSETSISHSSVDSRLVSNLGLDELTASSHVNKLIEDLRSQSIEVQTTAAEELRLLTKHNTENRIIVGQCGAVKPLLSLLYSDGNLTQEHAVTALLNLSINEDNKALIMEAGAIDPLIHVLKTGNDGAKENSAAALFSLSVLENSKAKIGRSGAVKALVDLLASGTLRGKKDAATALYNLSIFHENKARIVQAGAVKFLVQMMDPDDGMVDKAIALLSNLSTIAEGRLEIAREGGIPLLVEIVESGSQRGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTLRAKEKAQQLLSHFRNQREGATGKGKS 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car04g00105 784 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Car04g00105 784 SUPERFAMILY RING/U-box 239 313 - -
Car04g00105 784 MobiDBLite consensus disorder prediction 348 378 - -
Car04g00105 784 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 779 - -
Car04g00105 784 SUPERFAMILY ARM repeat 490 771 IPR016024 -
Car04g00105 784 PANTHER U BOX DOMAIN-CONTAINING 11 779 - -
Car04g00105 784 Pfam Armadillo/beta-catenin-like repeat 616 649 IPR000225 GO:0005515
Car04g00105 784 Pfam Armadillo/beta-catenin-like repeat 528 567 IPR000225 GO:0005515
Car04g00105 784 Pfam Armadillo/beta-catenin-like repeat 569 608 IPR000225 GO:0005515
Car04g00105 784 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 621 663 IPR000225 GO:0005515
Car04g00105 784 Pfam U-box domain 242 312 IPR003613 GO:0004842|GO:0016567
Car04g00105 784 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 662 703 IPR000225 GO:0005515
Car04g00105 784 MobiDBLite consensus disorder prediction 454 476 - -
Car04g00105 784 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Car04g00105 784 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 539 581 IPR000225 GO:0005515
Car04g00105 784 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 327 IPR013083 -
Car04g00105 784 MobiDBLite consensus disorder prediction 346 378 - -
Car04g00105 784 Gene3D - 481 777 IPR011989 -
Car04g00105 784 CDD RING-Ubox_PUB 245 287 IPR045210 -
Car04g00105 784 SMART arm_5 691 731 IPR000225 GO:0005515
Car04g00105 784 SMART arm_5 569 609 IPR000225 GO:0005515
Car04g00105 784 SMART arm_5 528 568 IPR000225 GO:0005515
Car04g00105 784 SMART arm_5 651 690 IPR000225 GO:0005515
Car04g00105 784 SMART arm_5 610 650 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car04g00105 Car-Chr4 1070040 1074967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car04g00105 7 784 U-box Gene Family AT3G54790 53.038 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car04g00105 - - gmx:100800949 1158.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car04g00105 04 1070040 1074967 Car04g00105 04 1070040 1074967 ECH